Basic Information

Gene Symbol
basR
Assembly
GCA_000789215.2
Location
NW:1362866-1366695[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 0.011 6.2 6.5 0.0 12 46 212 248 205 248 0.78
2 5 1.8e-10 1e-07 31.4 0.3 1 44 254 298 254 300 0.93
3 5 8.1e-07 0.00048 19.7 0.1 2 46 309 357 309 357 0.90
4 5 8.2e-10 4.8e-07 29.3 0.0 2 46 364 409 363 409 0.92
5 5 7.4e-09 4.4e-06 26.2 0.0 3 45 417 460 416 461 0.95

Sequence Information

Coding Sequence
atgatatCAATTAATGTTGAAAACTCTGCCTCTGAAGATGGTAGCTTTGAAgATTGGTCGGATTCTGAAATGGAGGAGGAATCCAACGCCGACTATGCGGCATTCAGTGACAGATATATGGGTGAGATAGCAAACTTACTGGGTGTTCACAGCCAAGTTAATTGTGAAAATGCATTAATATTGAACCAGGAGATGCAGCAACGTCTGCAAGAAGTGCGAAAACGTTTGCAAGCCTTATTACAAGTTGTTCAACAGCGATACCTTTCAAACGAGCAACGACTGAAAATGAATTTGGGCAAAAAGCAGCGAGGATTTGGAATGCGTGGTGCCTACCTTAAAGGAGGCACTTtcttttttaaaggaaatatgttttttaaagaCCTCAAATGCCGGAACTGTCCAAACAATCAAGATTACGAATATCGTAAGAATGTAGAAAACGAAATGTTTCCAATGGACTTTGAGTTATGTAGCCGCCATGTTTGGTCACTATTGGACAAAAAAGCTGTGGTCCAAGCAGTGAAAGAACAGGTAGTTGACTACTTAGCAGATCACCAAATTCGAGACAAAagtaataaatcgaaaaaactcACACTAGATATAAAAGTTCACACAGAGAAGTTGGCAAATCTTTTAACACAAGTAGATGAAAAATTCGAGGTTGATTGGGAGCAAGTGTCTGCGCATAACTTAAACTATCGACATTCACCTAGCAGTTGTAAGACAATGTGGCAAGTATACTTGCATCCATCGCTTAAGCGTAGCGATTGGtctgaagaagaaaataaacgaCTCTTACATGTAGCGCAAATTCATAATTATCAAAATTGGGAAAAGATCGCCAAATCAGTTTCGAAACGTTCTGATTATCAATGTTTTATACAATATCAAACGACTGTTTGTTTTATGGACACACAACGTTGGGGTCGTTGGGATAAACGTGATGATATTAAGTTACTAAAATTAATAGAGAAAAAGTCCATAAACGGAGTAATCGATTGGAATGTAGTGGCGACTTATTTTCCCCACAAACCGAAAAAATCATTACATCAAcgttacatatattatttggaTCCAAAGATTAGTCATGAACCATTTTCGCCTGAAGAAGACCTCATATTGTTGGCAGCGGTTGAAGAATACGgagaaaaatttgcattatttccACGTACACTTTTTCCAAATCGCTCTATAACACAGCTTCGTATGCGTTACAGAAATACATTACAAACTCGTCATAAGCTAACACCCTGGTCTGTAGAGGATGATAAGAAACTTATGGAGTTTATAGCCGAGCACGGTACATCGGCTTGGCTTCGTTGTGCTGGAGCTCTCGGTAACCACAATCGTATTAGCTGCCGTACACGTTTCCTTACTATAAAGaagttttttgccaaaaatccaGAGGCTACACTTGAAGACATACCCAGAAAAAAGACATGTACAATGAAGAATAGTGTTATTACAACCCAAAATTGGGTCGAAAAAGTCGCAGAATTGCGAGAAAACCCCGACACTGTGCTTGTACCAATGAATCAGAAGTTTAAGAAACTTAAAGAAAAGGTTGATAAGTTTGAAGAAGTGCTCAAAACTCCTCCAAAATGCGAAGTGCAAACGTTGAGAAAAATTGGGAAAAAAGTTCGGAAAATATCATATGTGGAACGTTTACGTGCTGTAGAACAAATACTCtatcatttctttaaatattcttataattttagtttaggTGCTGATGTATGTACTAAACCACCAAATGAATTATTACGTTTTGTGGCAACATCACTCGATTTTAAGCCGAACTCTGCGCAGCCATATATTGCGGACAGTTTGCTATTACCGCATATTGAACGTTGTTGCGAATTTTATCTATATCCGAAAAACCAAATTGCAAATGAATCTGTATGTAAGCCCTTCAACTATACATTTGCACCAAGTTGGTCGACAGCAATGGCCTTCCGAGCGCTATGCGTGCAATCGGCTCAGGTACAATTAGAGGGATGTAAATCTGTAGATAACATCGATAACCGCAAACCAagggaaaataagaaaaatatagcGATACAGAAATTTCGTAAACGCATGCGTGCATTACTTTATCAAACAGCCCTATTAAGTCGTTTACAACCAACTCGATTTACAGAACTAATGAAAATCAGCACACCGCCTGTAACATTAACAGAAGTAACACCTGCAGATTTCAAAGAAGATACCGCCACAAGTGCAATTGGAACTCCAGCAAGTCAACTGGCTTTCGATTTAACTCGCGTGAAAAACGAGTGTTCATCTGAATTTTTGGGTAATCCGGAACCCTTCTCGGAGGCATTGTACAAACGTACTTCACTGGATGAGGTTTCGAAAAGTGAGAAAAAACCAAGACGAATGTCGAAACCGGTTGGTCGAAAAAGAAAGTTGCAAAAAACACCATCTGAAACCACACCAGCAGTAATGCCGGTGGCCGAGAAAAGTTTGCTGTTAGACGTTGAATTTTCACAGAGTGCTGCTGCACTTGTTTCCAAACCAACCTCTACACAACCAGCTCTTTATGATATTAAGCAAGAGCATCAAACTTGCGCTGCAGCGGCATCTAATCAAAGTTTAAACTCGTGCATTATGACACGGAATGGCATATTTCTAGAAAGTCCGTCTTCAGAGCCGGCGGAGAAACGAATTCTAATTGAGGCAAAACATGATAAATCAGATTTCGTTGAGCCTAATATAAAAACTGAGCTTTACGAATTCTACTAA
Protein Sequence
MISINVENSASEDGSFEDWSDSEMEEESNADYAAFSDRYMGEIANLLGVHSQVNCENALILNQEMQQRLQEVRKRLQALLQVVQQRYLSNEQRLKMNLGKKQRGFGMRGAYLKGGTFFFKGNMFFKDLKCRNCPNNQDYEYRKNVENEMFPMDFELCSRHVWSLLDKKAVVQAVKEQVVDYLADHQIRDKSNKSKKLTLDIKVHTEKLANLLTQVDEKFEVDWEQVSAHNLNYRHSPSSCKTMWQVYLHPSLKRSDWSEEENKRLLHVAQIHNYQNWEKIAKSVSKRSDYQCFIQYQTTVCFMDTQRWGRWDKRDDIKLLKLIEKKSINGVIDWNVVATYFPHKPKKSLHQRYIYYLDPKISHEPFSPEEDLILLAAVEEYGEKFALFPRTLFPNRSITQLRMRYRNTLQTRHKLTPWSVEDDKKLMEFIAEHGTSAWLRCAGALGNHNRISCRTRFLTIKKFFAKNPEATLEDIPRKKTCTMKNSVITTQNWVEKVAELRENPDTVLVPMNQKFKKLKEKVDKFEEVLKTPPKCEVQTLRKIGKKVRKISYVERLRAVEQILYHFFKYSYNFSLGADVCTKPPNELLRFVATSLDFKPNSAQPYIADSLLLPHIERCCEFYLYPKNQIANESVCKPFNYTFAPSWSTAMAFRALCVQSAQVQLEGCKSVDNIDNRKPRENKKNIAIQKFRKRMRALLYQTALLSRLQPTRFTELMKISTPPVTLTEVTPADFKEDTATSAIGTPASQLAFDLTRVKNECSSEFLGNPEPFSEALYKRTSLDEVSKSEKKPRRMSKPVGRKRKLQKTPSETTPAVMPVAEKSLLLDVEFSQSAAALVSKPTSTQPALYDIKQEHQTCAAAASNQSLNSCIMTRNGIFLESPSSEPAEKRILIEAKHDKSDFVEPNIKTELYEFY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

90% Identity
iTF_00193490;
80% Identity
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