Basic Information

Gene Symbol
basR
Assembly
None
Location
JAPVRH010007909.1:21669-25016[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 6 2.4 3.3e+03 -1.4 0.1 3 18 161 176 159 177 0.87
2 6 0.011 15 6.0 0.1 17 46 217 248 205 248 0.78
3 6 1.1e-09 1.5e-06 28.5 0.1 1 44 254 298 254 300 0.94
4 6 1.5e-07 0.0002 21.7 0.1 2 46 309 357 309 357 0.89
5 6 6.3e-10 8.7e-07 29.2 0.0 2 46 364 409 363 409 0.92
6 6 3.4e-08 4.6e-05 23.7 0.0 3 44 417 459 416 461 0.95

Sequence Information

Coding Sequence
ATGTTATCCATTAGTGTTGATAACTCGTTCTCTGAAAATGATAACGTTGAAgATTTTTCGGATTCTGAAGTCAGGGGAGAATCAAGCACCGACTATGCTGCATTCAGTGCCAGGTACATGGGTGAAATAACAAACTTACTAAACGTACACAGCCAAGTTAATTGTGAGAATGCATTAATACTGAACCAGGAGATGCAACAACGTCTACAAGAAGTGCGAAAACTTTTACAGGTCTTGTTACAAGCTGCTCAAAATCGATACCTGTTAAACGAACAAAGACTGAAAATGAATTTAGGAAAAAAGCAACGCGGATTTGGAATGCGGGGTGCCTACCTTAAAGGTGGTACATTCTTTTTTAAGgggaatatgttttttaaagaTCTCAATTGTCGGAACTGTCCAAACAATCAGGATTACGAATATCGTAGGAATGTGGAGAACGAAATCTTCCCAATGGACTTTGAGCTATGCAGTCGCCATGTTTGGTCATTATTAGACAAAAAAGCTTTGGTCCAAGCAGTGAAAGAGCAGGTGGTTGACTTCTTAGCAGATCACCAAATGCGAGACAAAAGTAATACATCGAAAAAGCTCACATCTGATATAAAAGTTCATACGGAGAAGTTGGCAAATCTTTTAACACAAATAGATGAAAAATTCCAGGTTGATTGGGAGCAAGTGTCTGCACATAACTTAAACTATCGACATTCACCTAGCAGTTGTAAAACAATGTGGCAGGTGTACTTACACCCCTCGCTTAAACGTAACGCATGGactgaagaagaaaataaacgTCTTTTATATGTAGCACAAATGCATAATTATCAAAATTGGGAGAGCATCGCAAAATCAGTTTTAAAACGTTCTGATTATCAATGCTTTATACAATACCAGACGGCCGTTTGTTTTATGGACACACAAAGGTGGGGTCGTTGGGATAAACGTGATGACATTAAGCTactcaaattaattaagaaaaagtcCATAAACGGAGTAATCGATTGGAATGCAGTAGCATCTTATTTTCCCCACAAACCGAAAAAATCATTACATCAAcggtacatatattatttggatCCAAAGATTAGTCATGaACCATTCTCGCCTGAGGAAGATCTTATATTGTTGGCAGCGGTTGAAGAATATGGAGAAAAATTCGCATTGTTTCCACGTACACTGTTTCCAAATCGCTCAATAACGCAGCTTCGTATGCGTTATAGAAATACATTACAATCTCGTCATAAGCTAACACCCTGGTCTGTAGAGGATGATAAGAAACTTATGGAGTTTATAACCGAGTACGGTACATCAGCTTGGCTACGTTGTGCTGAAACTCTCGGCAACCACAATCGTATAAGCTGCCGTACACGTTTCCTTACAATACAGaagttttttggaaaaaatccCGAAGCTACACTTGAAGACATACCACGAAAAAAGACATGTACAATGAAGAATAGTGTCATTACAACTCAAAATTGGGTGGAAAAAGTAGCAGAATTGCGGGAAAATCCCGACACTGTGCTCGTACCGTCGAATCGAAAGTATAAGAAAGTTAAAGAAAAGGTGGATAAGTTTGAAGAAGCACTCAAAACTAACGAACCACCAAAATGCGAGGTGCAAAGATTGAGGAAAATAGGGaataaaaatcggaaaataccTTACGTGGAGCGTTTACGTGCTGTTGAACAAAAGCTGTATCATTACtttaaatatgcttataaTTTTCGTTTAGGAGTGGATGTATGTACTAGACCTCCAAATGAGTTATTACGTTTTGTGGCAACATCGCTCGATTTTAAGCCAGATTCTGCGCGACTATATATTGCGGACAGCTCTCTATTACCGCATATTGAACGCCGTAGCTCATTTTATCTACACCCCAAAGATCAAATAGGTAACGAAGCTTCCGATAAGCCATTCAACTATTCATTTCCCCCAAGTTGGTCAACTGCAATGGCCTTCCGAGCGCTATGTGTGCAATCGGCTCAGGTGATATTAGAAGGATGTAAATCTGATGATAACGGCGATGAGCACAATGCaagtgcaattaaaaaaaataaagcggTACAAAAATTCCGTAAACGCATGCGTGTATTACTGTATCAAACAGCCCTGTTAAGTCGTTTACAACCAACTCGATTTACTGAACTAATGCAAATCAGCCCACCGCCAGTAACATTAACAGAAATGACTCCTGAAGATTTCATAGAAGATACCGccacaaatgcaaatgaagcTGCAACAGTTCAAGCGGAATTTGATTTAACTCGTGTGAAGAACGAGTGTTTATCTGAATATTTGGATAATCCTGAACCATTTTTGGTGACACTGAACAAACATGCGTCAATGGAAGAGGTTTcgacaaatgaaaaaaagccACGACGAACGTCGAAACCAGTTAgtcgaaaaagaaaattacaaacaacttCACCATTTAAAACCacaacAGTAATGGCGGTAGCTGAGAAAAGTCTGCTGTCAGACTTTGAATTTACAGAGAATGCTGCTGAACGCAGAGATGCGGCACTTGTTTctaaagcaacaaatatacCATCAGTTCTTTATGATATTAAACAAGAATATCAAACATACGTTGCAGCGGTGTCTGATCAAGGTTTAACCGCCATGCAGGAAGATTCAGCAAAAGATTCGCGTATTATGACAAatcaaaaaaggaaattttcagAAAGTCAATCATCACAGCCGGCGGAGAAGCGAGTTCTCATTAAAGCAAACTGTGATAAATCCGAATTCAATGTGGTTAATATAAAGACCGAGCTTGAACTGTAG
Protein Sequence
MLSISVDNSFSENDNVEDFSDSEVRGESSTDYAAFSARYMGEITNLLNVHSQVNCENALILNQEMQQRLQEVRKLLQVLLQAAQNRYLLNEQRLKMNLGKKQRGFGMRGAYLKGGTFFFKGNMFFKDLNCRNCPNNQDYEYRRNVENEIFPMDFELCSRHVWSLLDKKALVQAVKEQVVDFLADHQMRDKSNTSKKLTSDIKVHTEKLANLLTQIDEKFQVDWEQVSAHNLNYRHSPSSCKTMWQVYLHPSLKRNAWTEEENKRLLYVAQMHNYQNWESIAKSVLKRSDYQCFIQYQTAVCFMDTQRWGRWDKRDDIKLLKLIKKKSINGVIDWNAVASYFPHKPKKSLHQRYIYYLDPKISHEPFSPEEDLILLAAVEEYGEKFALFPRTLFPNRSITQLRMRYRNTLQSRHKLTPWSVEDDKKLMEFITEYGTSAWLRCAETLGNHNRISCRTRFLTIQKFFGKNPEATLEDIPRKKTCTMKNSVITTQNWVEKVAELRENPDTVLVPSNRKYKKVKEKVDKFEEALKTNEPPKCEVQRLRKIGNKNRKIPYVERLRAVEQKLYHYFKYAYNFRLGVDVCTRPPNELLRFVATSLDFKPDSARLYIADSSLLPHIERRSSFYLHPKDQIGNEASDKPFNYSFPPSWSTAMAFRALCVQSAQVILEGCKSDDNGDEHNASAIKKNKAVQKFRKRMRVLLYQTALLSRLQPTRFTELMQISPPPVTLTEMTPEDFIEDTATNANEAATVQAEFDLTRVKNECLSEYLDNPEPFLVTLNKHASMEEVSTNEKKPRRTSKPVSRKRKLQTTSPFKTTTVMAVAEKSLLSDFEFTENAAERRDAALVSKATNIPSVLYDIKQEYQTYVAAVSDQGLTAMQEDSAKDSRIMTNQKRKFSESQSSQPAEKRVLIKANCDKSEFNVVNIKTELEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00190602;
90% Identity
-
80% Identity
-