Bros065175.1
Basic Information
- Insect
- Bacillus rossius
- Gene Symbol
- su(Hw)
- Assembly
- GCA_032445375.1
- Location
- CM063647.1:34918066-34940868[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.8e-05 0.0048 19.7 0.8 1 23 67 90 67 90 0.97 2 12 1.1e-05 0.0029 20.4 0.2 1 23 96 118 96 118 0.98 3 12 3e-05 0.008 19.0 1.9 1 20 124 143 124 145 0.95 4 12 1.8e-07 5e-05 26.0 1.1 1 23 156 178 156 178 0.97 5 12 0.00014 0.038 16.9 5.7 1 23 188 210 188 210 0.99 6 12 3.3e-05 0.009 18.9 2.6 1 23 216 238 216 238 0.98 7 12 9.4e-06 0.0026 20.6 1.1 1 23 244 266 244 266 0.99 8 12 2.2e-06 0.0006 22.6 3.3 1 23 272 294 272 294 0.95 9 12 0.00046 0.13 15.3 1.7 1 23 300 323 300 323 0.94 10 12 7.3e-05 0.02 17.8 0.8 1 19 329 347 329 347 0.98 11 12 5.9e-06 0.0016 21.2 0.8 1 23 357 381 357 381 0.98 12 12 8.3e-07 0.00022 23.9 2.0 2 23 388 410 388 410 0.97
Sequence Information
- Coding Sequence
- ATGCCTGCTGTTGACACTGGTGCATCTTCGGAGGTGACTGAGGATGATCCAGAGGAGGCAGACATGTCACTGCGAGACCAAATGAAAGGAGTAATGCTGAGCAAGGTTAATGAGCTGATTGATGAGACTACTGCCTCTGGACCTGTTAAGTGTCATTGCTGTGGAGAGGATCTGGAGACTGCACACGTTGGGGGAGAGTTTGAGTGCGTCGACTGCGCCAAGTTCTTCAAGTTGAAGTCCAGCCTTGAGAGGCACCGCAGAGTCATCCACTTCGAAGGGGACACGTACGAGTGTCCGGAATGTGGTGCCCGCTGCCCCGACAAGGGAACTCTAGCTCGGCACATTTACACCCACACAGGTTTAAAGCCTTATTCATGCTCTCGGTGCAACAGACAGTTCAGCCGGAAATACCACCTGGAGCGTCACGTTATTCAAACTGGCTGTGATGGAAACCCTAAACCTTCACACCCTTGTCAGGTGTGTGGGCGGATGTTCAGCCGGAAGGACAACCTGCGAGAGCACCTTCGCGCCCACGCGGGCCAGGTGAAGCAGAAGAAGAAGTTCACCTGCGTGCACTGCGACAAGGTGTTCCACGGCTCCACCCTGCTCCACATCCACATGCGCACGCACACAGGAGAGCGGCCGTATCACTGTGATTTCTGCCCTAAACGTTTCCCGTCGAGCGGTGCCATGAAGAAGCACAGGCGTATGCACACTGGTGAGCGGCCGTACGAATGCAAGGAGTGTTTCGCCAAGTTCTCGGCGAAGGAGACGCTGAACCGCCACATCAGGACCCACACTGGCGTGAAGCCTCACTCCTGCCAGTACTGCGGGAAGAGCTTCATCCAGGCGTCTCAGCTGCGAGCTCACATTTTCCACCACACTGGTGAGAATGGTTTTACTTGTGGACACTGCCAGAAAGCATTCAACCGACGGGCCCGCCTGATCTTGCACGTCAAGTTTGTTCATGAGGGAGCCAAGCCTTTCGAATGCACCAAATGCAAGCGGACATTTGTGCGCAAGGAAGATCTAGCTCGTCATGACGTACTGCATTCTGGCGTTAAAGCTCACAAGTGCCCCATTTCTATTTGTGAGAAGTCATTTGCTATGAAGTCTTCCTTGAAAATCCATCTTTTGACTCACACCAAGGAGCCGCCGCGCTCGTGCGAGGAGTGCGGCCGGGCCTTCATCCGGCAGGACTGCCTGCTGCGCCACATGCGCACCAAGCACCGCGACATGCTGGAGGAGATCCTGGCCGAGGCGGAGAAGAAgaagctgcagcagcagcagctgctgGCGGCGGCCGGCGCGGGGCCCGCCCGGGGCGTGGCCAAGGGCGAGGGGCCCGGCGCCCAGGCGGGAGAGGCGGGCGTGCTGGGCGACGAGGCCCTGGCAGACTCGGTGCGCGAGCTGCTCACCCTGCTGGTCGACGAGGCCACGCTCAAGGGATTCGGATGGCCCAATGCACCGGTTGATCGTCTCTTGGAGGCCGTCATCAAGCGCTGCGGCCACCAGCCGATGGGGTCGGATGACCTGGGCTACACGGACCGGCTGCGCGAGAACGCCAAACTGCTCTTCACGGTGGTCATTGACGACTCTGCCGTGAAGACGCTCTTGAACAACCAGACGGTGGACGAGGTCATCTTGCACGTTTTGCGCCTTGCCAAATCGTGA
- Protein Sequence
- MPAVDTGASSEVTEDDPEEADMSLRDQMKGVMLSKVNELIDETTASGPVKCHCCGEDLETAHVGGEFECVDCAKFFKLKSSLERHRRVIHFEGDTYECPECGARCPDKGTLARHIYTHTGLKPYSCSRCNRQFSRKYHLERHVIQTGCDGNPKPSHPCQVCGRMFSRKDNLREHLRAHAGQVKQKKKFTCVHCDKVFHGSTLLHIHMRTHTGERPYHCDFCPKRFPSSGAMKKHRRMHTGERPYECKECFAKFSAKETLNRHIRTHTGVKPHSCQYCGKSFIQASQLRAHIFHHTGENGFTCGHCQKAFNRRARLILHVKFVHEGAKPFECTKCKRTFVRKEDLARHDVLHSGVKAHKCPISICEKSFAMKSSLKIHLLTHTKEPPRSCEECGRAFIRQDCLLRHMRTKHRDMLEEILAEAEKKKLQQQQLLAAAGAGPARGVAKGEGPGAQAGEAGVLGDEALADSVRELLTLLVDEATLKGFGWPNAPVDRLLEAVIKRCGHQPMGSDDLGYTDRLRENAKLLFTVVIDDSAVKTLLNNQTVDEVILHVLRLAKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00396513; iTF_01567182; iTF_01289136; iTF_00370377; iTF_01446816; iTF_01447754;
- 90% Identity
- -
- 80% Identity
- -