Basic Information

Insect: Timema douglasi
Gene Symbol: su(Hw)
Assembly: GCA_901482245.1
Location: CABEEJ010000452.1:186523-222177[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 6e-06 0.0014 21.2 1.2 1 23 128 151 128 151 0.97

2 12 1.6e-05 0.0037 19.9 0.4 1 23 157 179 157 179 0.98

3 12 3.2e-06 0.00077 22.0 1.9 1 20 185 204 185 206 0.95

4 12 2.1e-07 5e-05 25.8 1.1 1 23 217 239 217 239 0.97

5 12 0.00037 0.089 15.5 5.5 1 23 249 271 249 271 0.99

6 12 1.5e-05 0.0035 20.0 2.3 1 23 277 299 277 299 0.98

7 12 0.00015 0.037 16.8 0.9 1 23 305 327 305 327 0.99

8 12 2.5e-06 0.00061 22.4 3.3 1 23 333 355 333 355 0.95

9 12 2.5e-05 0.0059 19.3 0.5 1 23 361 384 361 384 0.96

10 12 3.7e-06 0.00087 21.9 0.4 1 23 390 412 390 412 0.97

11 12 6.8e-06 0.0016 21.0 0.8 1 23 418 442 418 442 0.98

12 12 9.5e-07 0.00023 23.7 2.0 2 23 449 471 449 471 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	6e-06	0.0014	21.2	1.2	1	23	128	151	128	151	0.97
2	12	1.6e-05	0.0037	19.9	0.4	1	23	157	179	157	179	0.98
3	12	3.2e-06	0.00077	22.0	1.9	1	20	185	204	185	206	0.95
4	12	2.1e-07	5e-05	25.8	1.1	1	23	217	239	217	239	0.97
5	12	0.00037	0.089	15.5	5.5	1	23	249	271	249	271	0.99
6	12	1.5e-05	0.0035	20.0	2.3	1	23	277	299	277	299	0.98
7	12	0.00015	0.037	16.8	0.9	1	23	305	327	305	327	0.99
8	12	2.5e-06	0.00061	22.4	3.3	1	23	333	355	333	355	0.95
9	12	2.5e-05	0.0059	19.3	0.5	1	23	361	384	361	384	0.96
10	12	3.7e-06	0.00087	21.9	0.4	1	23	390	412	390	412	0.97
11	12	6.8e-06	0.0016	21.0	0.8	1	23	418	442	418	442	0.98
12	12	9.5e-07	0.00023	23.7	2.0	2	23	449	471	449	471	0.97

Sequence Information

Coding Sequence: ATGAGGTTTTGCCAGGCCACTGAGCTTGCGGTCACTAAGACAGAAGCTGAGGAGTCCTTTCAATCTGAAGAGGCAGGAGAGGAGATCACCCAACCAGAAGGCTCAGAAGGTGTCGGCGAACTTGAGGCGGCCTCTCAAGATGAGCTGGAAGATTCGGATGACATTGGCCTCACAGACGATGATATTGATGAGGAAGATTACGAGGATGAGGATGGGGAAGATGGACTCATTCCCCCGGATGGAGACATAAACCTTCGAGATCAGATGAAAGGTGTGATGCTGAGCAAGGTGAATGAACTGATAGATGAGACTTCGGCCACAGGACCTGGAAAGTGTCATTGTTGTGGGGAAGATCTGGATACTGCCCATCTGGGTGGGGAGTTTGAATGTGTGGACTGCTCCAAGTTCTTCAAGCTTAAGTCCAGCCTGGAGCGACACCGCCGTGTAATCCACCTAGAAGGGGACACCTATTCATGCCCAGAGTGCGATGCTCGATGTCCGGACAAGGGTACACTGGCTCGACACATGTACACACACACAGGACTCAAGCCTTACTCCTGCACTCGGTGTGATAAGCAATTCAGTAGGAAGTACCATTTGGAGCGGCACATCATTCAAACTGGTTGTGATGGGAACCCCAGACCTACTCACCCTTGTCAGGTGTGTGGGCGCATGTTCAGTCGCAAGGATAATCTTCGTGAGCACTTACGTGCACATGCCGGGCAGGTCAAGCGCAAGAAGAAGTATACTTGCGTTCACTGTGAGAAAGTGTTCCATGGCTCCACACTGCTTCATATACATATGCGCACTCACACAGGTGAAAAACCATACCATTGTGACTTCTGTCCCAAGAGCTTTCCGTCCAGCGGGGCTATGAAAAAACACCGACGCATGCACACAGGAGAGCGGCCTTATGAATGCAAGCAGTGTTTCGCCAAATTTGCTGCCAAGGAGACCTTGAACCGTCATGTGAGGACCCACACCGGCGTCAAGCCCCACAGTTGTCAGTACTGCGGGAAGAGCTTCATTCAGGCATCCCAACTGCGTGCACACATCTTCCACCACACagGTGAGAATGGATTTACATGCACCATCTGTGGCAAGGCATTCAACCGCCGGGCGCGTCTCCTACTCCACGTCAAGTATATACATGAGGGGGCTAAGCCATATGAGTGTGAGCAGTGCTCCAAGACATTTGTGCGCAAGGAGGATCTTGCGCGGCATACTATCCTTCACACAGGTGTCAAAGcCCATAAATGTCCTATATCCATATGCGAGAAATCCTTTGCCATGAAGTCTTCATTGAAAATCCACCTCTTGACACACACAAAGGAACCACCACGATCGTGCGAGGAATGTGGCCGTGCATTCATCCGTCAGGACTGCCTTCTGAGGCACATGAGGACCAAGCACCGGGATATGTTGGAGGAGATACTTGCTGAGGCAGAGAAGAAGAAACTGCAGCAACAGTTGTTGGCAGCTGCCACGGCAAGCATAAACAGCGGCTCTGGTTCCACTCCAGGTACAGCTGCTACAGAAGGTGGTAGTATCTCTAAGCCAATGTCGGCAATGGAACCTGCCACACTCACAGAGGCTGCTCTGGCAGAGTCCGTCAAGGAGCTCCTCACGTTGCTGGTAGACGAGGCAACCCTCAAGGCATTTGGCTGGCCAACAGCACAGGTAGACCGGCTCCTGGAGGCAGTGATTAAGAGGTGTGGTCACCAACCTGTGGGGCTGGACGAACTCACTTACACTGACAGGTTGCGAGAGAACGCCAAGCTCCTGTTCACAGTTGTCATTGATGATTCAGCTGTCAAGACCCTCCTCAACAACCAGACTGTGGATGAGGTTATTCTGCATGTTCTGAGACTCGCCAAATCGTAA
Protein Sequence: MRFCQATELAVTKTEAEESFQSEEAGEEITQPEGSEGVGELEAASQDELEDSDDIGLTDDDIDEEDYEDEDGEDGLIPPDGDINLRDQMKGVMLSKVNELIDETSATGPGKCHCCGEDLDTAHLGGEFECVDCSKFFKLKSSLERHRRVIHLEGDTYSCPECDARCPDKGTLARHMYTHTGLKPYSCTRCDKQFSRKYHLERHIIQTGCDGNPRPTHPCQVCGRMFSRKDNLREHLRAHAGQVKRKKKYTCVHCEKVFHGSTLLHIHMRTHTGEKPYHCDFCPKSFPSSGAMKKHRRMHTGERPYECKQCFAKFAAKETLNRHVRTHTGVKPHSCQYCGKSFIQASQLRAHIFHHTGENGFTCTICGKAFNRRARLLLHVKYIHEGAKPYECEQCSKTFVRKEDLARHTILHTGVKAHKCPISICEKSFAMKSSLKIHLLTHTKEPPRSCEECGRAFIRQDCLLRHMRTKHRDMLEEILAEAEKKKLQQQLLAAATASINSGSGSTPGTAATEGGSISKPMSAMEPATLTEAALAESVKELLTLLVDEATLKAFGWPTAQVDRLLEAVIKRCGHQPVGLDELTYTDRLRENAKLLFTVVIDDSAVKTLLNNQTVDEVILHVLRLAKS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00189212;
90% Identity: iTF_01447754;
80% Identity: -