Basic Information

Insect: Reticulitermes lucifugus
Gene Symbol: su(Hw)
Assembly: GCA_026260175.1
Location: JAKCWW010004296.1:13475-22141[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0016 0.16 13.2 1.1 1 21 54 74 54 75 0.96

2 13 1.5e-05 0.0015 19.6 0.6 1 23 165 188 165 188 0.97

3 13 4.4e-05 0.0044 18.1 0.4 1 23 194 216 194 216 0.98

4 13 2.3e-05 0.0023 19.0 2.5 1 20 222 241 222 243 0.95

5 13 1.7e-07 1.7e-05 25.7 1.1 1 23 254 276 254 276 0.97

6 13 0.00029 0.029 15.5 5.0 1 23 286 308 286 308 0.98

7 13 5.9e-06 0.00059 20.8 1.7 1 23 314 336 314 336 0.99

8 13 0.00013 0.013 16.6 0.4 1 23 342 364 342 364 0.99

9 13 1.1e-05 0.0011 20.0 3.5 1 23 370 392 370 392 0.95

10 13 5.9e-05 0.0058 17.7 2.5 1 23 398 421 398 421 0.96

11 13 2e-05 0.002 19.2 0.2 1 23 427 449 427 449 0.93

12 13 1.9e-06 0.00019 22.4 3.3 1 23 455 477 455 477 0.98

13 13 7.9e-07 7.9e-05 23.6 2.0 2 23 484 506 484 506 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0016	0.16	13.2	1.1	1	21	54	74	54	75	0.96
2	13	1.5e-05	0.0015	19.6	0.6	1	23	165	188	165	188	0.97
3	13	4.4e-05	0.0044	18.1	0.4	1	23	194	216	194	216	0.98
4	13	2.3e-05	0.0023	19.0	2.5	1	20	222	241	222	243	0.95
5	13	1.7e-07	1.7e-05	25.7	1.1	1	23	254	276	254	276	0.97
6	13	0.00029	0.029	15.5	5.0	1	23	286	308	286	308	0.98
7	13	5.9e-06	0.00059	20.8	1.7	1	23	314	336	314	336	0.99
8	13	0.00013	0.013	16.6	0.4	1	23	342	364	342	364	0.99
9	13	1.1e-05	0.0011	20.0	3.5	1	23	370	392	370	392	0.95
10	13	5.9e-05	0.0058	17.7	2.5	1	23	398	421	398	421	0.96
11	13	2e-05	0.002	19.2	0.2	1	23	427	449	427	449	0.93
12	13	1.9e-06	0.00019	22.4	3.3	1	23	455	477	455	477	0.98
13	13	7.9e-07	7.9e-05	23.6	2.0	2	23	484	506	484	506	0.97

Sequence Information

Coding Sequence: ATGGACATGGAGAATAAAGAGAATGCAGAAGAGCCTGAGCGGCGCACGGAACTGACGGCGCAAGCCTCACACAAGCCAGAGCTGCGTGGCCGCCTCAGAGCCACTAGTGAGAGGAGCAAGAAGTTGGGTGAAACATCACAGGTTGTGGACTCCATGGAGTACACGTGTGCTGCCTGCCAGCGCAACTTCACAAACCTGTCGGGTTTCAGGCGCCACCAAAAGTTCTGTCAGGGAACAAGGCCTGCTGTTTCCACTGTGGAGGTGGCTGTGGCCAAAGTTGAGGCAGTTGAAGCAGTGGCTGAGGCAGACTTGGAAGTCGGAGCAGTTGGTGATCATTTAGCTGCAGAAATGATGGACAGTACACTCAGGGACAAGATGAAAGGGGTGATGCTGACAAAGGTGAACGAGTTGATCGATGAGACCACTGCAACGGGCCCTGGAAAGTGCCACTGTTGTGGAGAGGACCTGGAGACAGCACACCTGGGAGGTGACTTTGAGTGTGTGGATTGTGCAAAGAACTTCAAACTGAAGTCAAGTCTGGAGCGACACCGACGTGTGATCCACTTGGAAGGTGACACATACTCTTGCCCAGAATGTGAGGCACGTTGTCCGGACAAGGGCACCCTGGCTCGCCACATGTACACACACACAGGACTGAAGCCATATTCATGCACACGCTGCAAGAAGCAATTCAGTCGCAAATACCACCTGGAGCGCCATGTGATCCAGACAGGGTGTGATGGCAACCCACGCCCCTCACACCCATGTCAGGTGTGTGGACGCATGTTCAGTCGCAAGGACAACCTACGAGAGCATTTGCGtgcacatgcagggcaggtgaagcgcaagaagaagtacaattgccagcactgcaacaaggagttccatggcactacacttctgcagatacacatgcgcacgcacacaggggagaagccatatcggtgtgacttctgcagcaagagcttcccatcgagtggtgccatgaagaagcatcgacgcatgcacaccggggagcgaccatatgaatgtaaagagTGTCTGGCTAAATTTGctgcaaaagagacactgaaccgtcatgtgaggacacacacaggggtgaagccccacagctgccagttctgtggcaagagcttcATACAAGCATCACAGCTACGAGCCCATATCTTCCATCACACTGGAGAGAATGGCTATACATGCGAGCACTGTAGCAAGGCCTTCAATCGTCGATCCCGCCTCATTATGCACGTCAAGTATGTTCATGAGGGAGCCAAGCCATATGAATGTGGACAGTGTACCAAGACATTCGTACGCAAGGAAGACCTTGCGCGCCATGCAGTGCTGCACACTGGGATCAAAGCGCACAAGTGTCCGATCTGCGAGAAGTGTTTTGCAATGAAATCATCACTCAAGATCCACCTGCTGACACACACAAAGGAGCCACCACGTTCGTGTGATGAGTGTGGGCGGGCATTCATACGCCAGGACTGTTTGTTGCGTCATATGCGAACCAAGCACCGTGATATGTTGGAAGAAATCCTTGCAGAAGCAGAGAAGAAAAAGTTGCAGCAGCAGCTGCTGGCTGCGGCAGGTGGCGGTGATGTGGGGACTCTGCCCCCTAGCAGGGATCCCATACCAGCAGCAACAATGGCTGCCATCGAATCGGGTACGGGCACCCTTGGAGAAAATGCACTGGCCGACTCAGTGCGGGAGTTACTCACATTACTGGTGGATGAAGCCACACTGAAGGCATTTGGATGGCCAGGTGCACCTGTGGACCGTCTTCTGGAAGCTGTCATCAGACGCTGTGGCCACCAGCCTGTAGGGGCTGGTGATGATTTGTCATATACTGACCGTCTCAGAGAGAATGCCAAGCTGCTGTTCACTGTGGTGATTGATGATTCTGCTGTTAAAACTCTGCTGAACAATCAGACTGTTGATGAAGTCATCCTACATGTTTTGCGGCTTGCAAAGACCTAA
Protein Sequence: MDMENKENAEEPERRTELTAQASHKPELRGRLRATSERSKKLGETSQVVDSMEYTCAACQRNFTNLSGFRRHQKFCQGTRPAVSTVEVAVAKVEAVEAVAEADLEVGAVGDHLAAEMMDSTLRDKMKGVMLTKVNELIDETTATGPGKCHCCGEDLETAHLGGDFECVDCAKNFKLKSSLERHRRVIHLEGDTYSCPECEARCPDKGTLARHMYTHTGLKPYSCTRCKKQFSRKYHLERHVIQTGCDGNPRPSHPCQVCGRMFSRKDNLREHLRAHAGQVKRKKKYNCQHCNKEFHGTTLLQIHMRTHTGEKPYRCDFCSKSFPSSGAMKKHRRMHTGERPYECKECLAKFAAKETLNRHVRTHTGVKPHSCQFCGKSFIQASQLRAHIFHHTGENGYTCEHCSKAFNRRSRLIMHVKYVHEGAKPYECGQCTKTFVRKEDLARHAVLHTGIKAHKCPICEKCFAMKSSLKIHLLTHTKEPPRSCDECGRAFIRQDCLLRHMRTKHRDMLEEILAEAEKKKLQQQLLAAAGGGDVGTLPPSRDPIPAATMAAIESGTGTLGENALADSVRELLTLLVDEATLKAFGWPGAPVDRLLEAVIRRCGHQPVGAGDDLSYTDRLRENAKLLFTVVIDDSAVKTLLNNQTVDEVILHVLRLAKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00189212;
90% Identity: iTF_01567182;
80% Identity: -