Apul030418.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- Litaf
- Assembly
- GCA_905475315.1
- Location
- FR997764.1:7069088-7071938[-]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-26 3.4e-23 82.3 16.4 2 69 68 136 67 137 0.94
Sequence Information
- Coding Sequence
- ATGGACGCCACAATGGAAAACAAAATGGGCCTTCCGCCGCCATACGAACAAACGAGACCTAACCCTGCGCCGCCACCGTCGTACTTCGGCGACAACCCTCCACCACCGCCAGGGTTAGTGGTCCCGCCACTGGGACCACGAACGACTGTCATCACGACACCAGCTCCAGCACCAGGTCACCGCACAGGAAAGATGGGGCCGGGACCGACTGGGACCAACTGCCCAACTTGCAACAAATCTATTGTGACCAGAGTAGAATACGTCCCTAATAACCGAACTCATATTGTATCGGCAGCTCTTTGCGTTCTAGCTGGTTGCTGTTGCGGCTGCTTCATACCTTACTGCATGAGGTCCTGCAAGACTGCCAACCACTATTGTCCTCAATGCAAGGCTTTCATCGGTTCCTACACGCCATCCTGA
- Protein Sequence
- MDATMENKMGLPPPYEQTRPNPAPPPSYFGDNPPPPPGLVVPPLGPRTTVITTPAPAPGHRTGKMGPGPTGTNCPTCNKSIVTRVEYVPNNRTHIVSAALCVLAGCCCGCFIPYCMRSCKTANHYCPQCKAFIGSYTPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00185813; iTF_00277062; iTF_00001671; iTF_00000857; iTF_00784874; iTF_00300833; iTF_00785697; iTF_00974305; iTF_00018690; iTF_00784066; iTF_00852355; iTF_00888867; iTF_00044132; iTF_00122020; iTF_00274916; iTF_00364581; iTF_01117925; iTF_01119909; iTF_00037446; iTF_00274118; iTF_01095526; iTF_00123015; iTF_00426023; iTF_00623687; iTF_01527943; iTF_00906728; iTF_01030792; iTF_01441608; iTF_00772553; iTF_00041451; iTF_00810667; iTF_00238380; iTF_00786444; iTF_01425644; iTF_00040461; iTF_00071981; iTF_00121069; iTF_00668109; iTF_01093709; iTF_01362189; iTF_01362765; iTF_01027918; iTF_01286094; iTF_00758831; iTF_00953199; iTF_00039440; iTF_00726992; iTF_01193296; iTF_00746385; iTF_01247729; iTF_01342673; iTF_00124850; iTF_00173842; iTF_00450674; iTF_00043155; iTF_00374835; iTF_01440659; iTF_00148148; iTF_00384244; iTF_01031636; iTF_01094580; iTF_00038358; iTF_00908470; iTF_01026966; iTF_01028886; iTF_00177751; iTF_01029815; iTF_01173847; iTF_00050489; iTF_01340825; iTF_00831802; iTF_01118906; iTF_00017851; iTF_01260667; iTF_01363611; iTF_00123900; iTF_00375933; iTF_00925405; iTF_00907550; iTF_00042303; iTF_00851359; iTF_00952383; iTF_00968479; iTF_01339615; iTF_00112192; iTF_00449792; iTF_00809728; iTF_01231232; iTF_01526688; iTF_01378055; iTF_00795369; iTF_00678186; iTF_00870229; iTF_00283013; iTF_00707529; iTF_01502634; iTF_01333394; iTF_00281945; iTF_00822553; iTF_00638332; iTF_00889791; iTF_00468650; iTF_01065226; iTF_00446785; iTF_01534466; iTF_01084808; iTF_00301770; iTF_01533614; iTF_01064304; iTF_00712529; iTF_01535506; iTF_00445782; iTF_00686008; iTF_01085977; iTF_00447835; iTF_01063419; iTF_01532699; iTF_00302716; iTF_01062428; iTF_00929246; iTF_00896449; iTF_00667042; iTF_00635079; iTF_00827661; iTF_00033491; iTF_00355796; iTF_00357093; iTF_01077146; iTF_00207515; iTF_00045053; iTF_00143564; iTF_00327535; iTF_01152723; iTF_01488211; iTF_00622490; iTF_01074115; iTF_00346403; iTF_01180829; iTF_01180002; iTF_01222144;
- 90% Identity
- iTF_00327535;
- 80% Identity
- iTF_00185813;