Apul010526.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Autographa pulchrina
Gene Symbol
-
Assembly
GCA_905475315.1
Location
FR997765.1:10005064-10009844[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.15 15 7.0 3.4 2 22 187 207 186 207 0.95
2 15 0.062 6.4 8.2 2.6 1 23 303 325 303 325 0.95
3 15 0.7 72 4.9 0.3 2 23 462 483 461 483 0.95
4 15 0.00063 0.066 14.5 0.6 2 23 563 584 562 584 0.96
5 15 0.037 3.8 8.9 0.2 1 23 592 614 592 614 0.97
6 15 0.067 6.9 8.1 3.6 1 23 650 672 650 672 0.95
7 15 0.00017 0.018 16.2 4.0 1 23 680 702 680 702 0.99
8 15 0.38 40 5.7 1.8 1 23 785 807 785 807 0.97
9 15 0.1 11 7.5 2.5 1 19 862 880 862 884 0.91
10 15 0.081 8.3 7.8 0.6 1 23 975 997 975 997 0.94
11 15 0.0027 0.28 12.5 1.2 1 23 1003 1025 1003 1025 0.96
12 15 0.0048 0.5 11.7 2.6 1 23 1115 1137 1115 1137 0.97
13 15 0.00012 0.013 16.7 1.4 1 23 1143 1165 1143 1165 0.99
14 15 0.24 25 6.4 2.9 1 23 1256 1278 1256 1278 0.96
15 15 0.0029 0.3 12.4 5.5 1 23 1289 1311 1289 1311 0.98

Sequence Information

Coding Sequence
ATGGGTCTACAATATGCAGAGAGGGAGATTGCCAGCTGCAAGAGTGACTCCAACGATGCTACAGCTTCAGATAATAATTTCAAAAAAGATTCATCGCAGTTGTCGCAAGATGTATACAGCCAGCTGTCACCTAACCTGAGCAATGAGTTACACAAACAAAGCAGAAAAATTCCCAGGCCAATACCACAACTAATACCTTTAAACACGTCGACACCCAATCAAAAACAATGTTCCGGCGAACCGCCAACTAAAAGGTTCAAGGAATCTTCACCAACAGATGTAAACGACAAAGAAGATCTGTCTAGTGATGTTATGTTAGTACCTGTTAATAGCCATCCATCTACTAAAGAAACCGCAGGCCGTAAGAAAAATGAGTCATTCTTCGACAGATTAAAAGAAAGACTGTTAACTGAAACAGGCGAAGAAGGTTCTTTAATATGTAAAATCTGTGGATTCGAAAGTAAATGTTTATCGGAACATTCTGTACACGAGAAAAATTGCTCACCGCTAAGTAATCGGATAACTGCAAATACATCGCTTACAAGTTTAAGCTCCACTCGATGCCAAAACTGCAGGCACAGATGTAAATCCAGTGCCGATTTGTACATTCACATGCAAACTTGCGGAAATAGAAAGTTAGAAAATGAAAATACTGTTCAAAATCAAGACAGTAATGATACAATCATTCCAATTCATGAAAAGGAGGCTGAACCACATCCGATGGAAAATGTTGTTTTTGTTTGGAACAATATAAACCAGGAGACGAATAAATTTGAAGTACCCCTAGATATAAACATAAACGACGATTGCACGCTTCCGGAACTACATAGAAGCTTTGAAGCTGAGATCGTTGACGAGAATGAAACCATGAATTTATCGCCGAGCCAAGCTATCGGACGAAAGGTATTTAAATGTCCACATTGTCCTTTTTTCTCTACAACTGCATCCAGATTTCACGTTCATATTGTAGGACACTTGAATAAAAAACCATTCGAGTGTTCCCTTTGCAAGTATAAATCCAATTGGAGATGGGATATTACTAAGCATATTAAGTTGAAGTCTGCAAGAGACCCGGAGCACAACGATGCGAAGGTGTTAATGACTGACGAAACCGGAAGGAGAAACTATAGCAAATATAACAAATTCTTAGCAATGCCGGTTTTAAATGAAAATGGTGAAAACGAGTTTCATTATTTAGATCCTAATACATCTGTAGACGGCAATATGGATATGGATGAATCTTTCAATGATATCTCAGACGTTATGAATGTACAATTTGAAATGCAACCGCTTAACTTACAGACTCAGCACGGGGAGGATAAATACGACTTTATTGATAACGGAAGCATAAATGAGTCGAAAAAACCTAAGAAAACGTTGTGGAAATGCAAAAAGTGCAACTACAAGGACCCATCCAGAGAAGCATTGTTGGAGCATGTCCGTGAGCACTCCAGAACGGATGCGGTCCCCGAAGAACCGCATAAGCCGGCTGTCAATAAGAAATCTGAAAATACCCCCGATCCGGCCGATCTGGCTTACCGTTGCGGGCATTGTAACCAATTATCAAATTGGAAACATGTTATCCAGCGTCATTGCCGATTAAAACACAATGGTGTCATAAAAGTTATAACTACAGTGAAGCCAAAACCCGATCCAGTGTTGAACATAAATGAGATTAGCAGCGACACTTGCAACAAGTGTCCGTACAGATCGAGCGACAAGAAGCAACTGATCGCTCATCTGCAACAACATCAACCCTCCCCGCATTCCATATTTAAATGTTACTTCTGCCCATACTTCGTCAAGGATGAACCAGAGCTAATACAACATCTTCTGCTTCACGGTATCACCGACCCAGAAGATTATATATCAAATGCAATGGGAACCAAATCCCCAGTACCAGAGCCGCAAACAACAGTAACTCCCCCAACAGCATCCACTAAACGTCACAAATGCACTGAGTGTCCGTACGAAACAAACAGCAAGTCACAGTTCATGTACCACGAACAGTTTCATCGATTGCCGGCCGATACACCTTATAAATGTCCCGAGTGCAACTACAGCGTGTCCAAGAGACATTTATTACACCAACACCTGAGAGTACACGGTATAGCGACCAAACGAATTGAATCAGAGGCAGAATTAGAAGCATCTTCATCACTCCAAAACAAAACAGACTCGAAAGATTTTACGAATCTTGATGAAACGCCATATGTTTGGGTCTCAGCAAAGAACGAGTTTCATAAAATGTACAAATGTCGATACTGTTCCTACGTTAATTCGCAAAAGTGTAAGCTTCCAAATCATGAAAAAATACACTGCATTGTATTTGAAAACAATGATACAACTCTTTATAAGTGCTTAGAATGCAAATTTACGTGTGATAGCGCCGGAAGACTAGCAGAACATTCCAAAAACCACGGCGAAATATACGGCCGCATCTATTGTCCCGTTGAGGACGATGTTCCAGACGAAGAACAAATTACTAAATTAAGAAAAGTTATAGAAATTGAAAAATTATCTAATGCAGATTTGTCCAAGGACGAAAATTCTGCGAACGAAAATCGTGAAATTAAGTTGTTATATTTTTGTAAGAAATGTCCATCAAGGTTCTTTGATGAAAGTGATTTACAAACTCATGACAAGTATCATGATTTAACGCATGCTAATAAATGTAGGAGTTGTGAATTTTCTGTTCCCGAAGATGATCAATTGGCAGCACATTTTAACGTCCACACCGACGAATATCACACTAAAACAAAGATGCTTAAATTTATTCACAATTCACATCCTTCTCACAGAGAGCCCGTCGTTGAACTTGTTCACTGTCAATCTACATCAGAGATTACGTGGATAGTGACGAGTCCCAGCACCGAAAGTGTAATGAAAAGGTCCCATGAAGGCAAAAGTGTGCCAAAGCAATATTATTGCAAACAATGCCCAGCAAAGTTTTTCAAAGGCTCAGCGCTTAATTATCACTTGGGCCTACATGGAGGTGAAGGTGAACATAAATGTAAGAAATGTAATTACGCTGTGAAGAACATAGGAAACTTAGCTAAACACGAAATGCTACATGAAACTGAAAACAAAGTAAGCAACTGTGATTACGAGTCGGGTGAAGACATGGACTACAAAAATATTCCACTGTCAGGCACAGATTTATTCCAGAGAAAGACGGAGGCTCAAAAGCGAGTCTTGACTGATAAAGACAAACTCGTTAAGCCAAATGATCATTTCCCTCCAGTCCTACAAGCCGATCCACAATTCGGCTATTTGATGCACGGTAATCCTGAATTTATATACCCAACATATCTCAAAAATGGACGCCAAAAGGAAAAGCGATATAAATGCCATAAATGTCCATCCGCATTTGAAAAAAGGGAACAATATAAAATCCATCTATCGTTACATGGTTCCAAACAAAGATATAAATGTGAGTTGTGTGATTATTCCGTTAAATATTATGCTAATTACGTTCAGCATATGAGAAAACATCAAATGAACGATGAAGCGCAGGCCGAAAGAAAAAAAGAAAACAGTGACTATGTGGAACCTGAAAATCAAGAAGATGTGAAACCAGATGACAGTTGTGATAATATTAAACTCGCAATTAAAACAATGCCTAAAGGAGCAAAGAGTGACTTCCAACAATTCTCAATAAGCGATCAACAAACTCTTCGACTGTTGCAGAGAAGACGGTCAATAAACAATAACGGCAAGGACACGAGCTTATCAGAAACTTCGCCAATTAAAGAGCGTAAAATGCACATGTGTTTGTTATGCCCATACACAAATCAGCGACAAGATTCTTTGACTAATCACTACAGAAGGCACGGCGACGCCGATGTATTCAACGCAGGAAGCCATAAATGTTCTCATTGTGACCTAGTAGTCGTGCAATCACATTTCCTCCGAGAGCATTTAAGAACGCACTTCAATTTCCATAAAACACTAAATCCGGAATGTTTCGTGGCTAACGATGATGTTAGCTTTACCATTACCAAGTTGGAAGAAGACAGTCAGCCAGTTGATCTCAAGTTAAACATGCAAAACAAGAGTTTTACGTGCAATGGTGAAAAAATATTTGTGAAAATTAAAACAGGTGAACTATTGGTAGAATAA
Protein Sequence
MGLQYAEREIASCKSDSNDATASDNNFKKDSSQLSQDVYSQLSPNLSNELHKQSRKIPRPIPQLIPLNTSTPNQKQCSGEPPTKRFKESSPTDVNDKEDLSSDVMLVPVNSHPSTKETAGRKKNESFFDRLKERLLTETGEEGSLICKICGFESKCLSEHSVHEKNCSPLSNRITANTSLTSLSSTRCQNCRHRCKSSADLYIHMQTCGNRKLENENTVQNQDSNDTIIPIHEKEAEPHPMENVVFVWNNINQETNKFEVPLDININDDCTLPELHRSFEAEIVDENETMNLSPSQAIGRKVFKCPHCPFFSTTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNDAKVLMTDETGRRNYSKYNKFLAMPVLNENGENEFHYLDPNTSVDGNMDMDESFNDISDVMNVQFEMQPLNLQTQHGEDKYDFIDNGSINESKKPKKTLWKCKKCNYKDPSREALLEHVREHSRTDAVPEEPHKPAVNKKSENTPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHNGVIKVITTVKPKPDPVLNINEISSDTCNKCPYRSSDKKQLIAHLQQHQPSPHSIFKCYFCPYFVKDEPELIQHLLLHGITDPEDYISNAMGTKSPVPEPQTTVTPPTASTKRHKCTECPYETNSKSQFMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGIATKRIESEAELEASSSLQNKTDSKDFTNLDETPYVWVSAKNEFHKMYKCRYCSYVNSQKCKLPNHEKIHCIVFENNDTTLYKCLECKFTCDSAGRLAEHSKNHGEIYGRIYCPVEDDVPDEEQITKLRKVIEIEKLSNADLSKDENSANENREIKLLYFCKKCPSRFFDESDLQTHDKYHDLTHANKCRSCEFSVPEDDQLAAHFNVHTDEYHTKTKMLKFIHNSHPSHREPVVELVHCQSTSEITWIVTSPSTESVMKRSHEGKSVPKQYYCKQCPAKFFKGSALNYHLGLHGGEGEHKCKKCNYAVKNIGNLAKHEMLHETENKVSNCDYESGEDMDYKNIPLSGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKENSDYVEPENQEDVKPDDSCDNIKLAIKTMPKGAKSDFQQFSISDQQTLRLLQRRRSINNNGKDTSLSETSPIKERKMHMCLLCPYTNQRQDSLTNHYRRHGDADVFNAGSHKCSHCDLVVVQSHFLREHLRTHFNFHKTLNPECFVANDDVSFTITKLEEDSQPVDLKLNMQNKSFTCNGEKIFVKIKTGELLVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01342576;
90% Identity
iTF_00185711;
80% Identity
-