Agaa025717.1
Basic Information
- Insect
- Autographa gamma
- Gene Symbol
- clz9
- Assembly
- GCA_905146925.1
- Location
- LR989861.1:1422426-1424978[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.7e-10 1.4e-07 31.6 0.0 3 36 27 61 26 68 0.89
Sequence Information
- Coding Sequence
- ATGGTACGGACCTACCAAAGAAAGTTTACTAACTCACGCAATGGTAAGAATCATTCACCTTACCTGAGTTATTGCAAAGAAGATTTGCAAAATGCAATAGAAGAAATTCAAAATGGCTCACTTAAATTAATAGAGGCGGCTAATAAATACAACATTCCAAAGAGTACATTAAGCAGAAAATGTCGAAATAAAAATTGTACACAAGAAAAAGCCGGACACCCTACTCTTTTTTCAAAAGATGAAGAGATGGCGTTCATAAAATACATACAAATATTGAGTAATTGGGGGTTTCCACTAGATTCTACAGACTTACGCGTATTTGCCCAAAAATACTTGAACAAACTAGGAAAAACCGTCTACAGTTTAAAAGACAATATGCCCGGAGTAGATTGGGCGCGAAATTTCATGATTAGGCATAAAGCTGAAATTTCCAATCGTAATGCATCAAATATCACAAGTGACCGCGCCAAAATTTTACCTGCTGTAATAGACGATTTTTTTTCGCATTATGAAAATACTATTGAAGGTGTCTCTCCTGATTGTATCATTAATTATGATGAGACTAATCTCACTGATGACCCGGGCCACAAGAAATTTTTATTTAAGAGAGGTTGCAAATATCCTGAAAGGGTAATCAACACAACAAAAACATCTATTTCTTTAATGTTTACCGGCACTGCTGATGGACAGTTATTGCCCACATACGTTGTATATAAAGCAGATCATTTATGGGATCAATGGCTAGAAGGAGGGCCTGAGGGGACGAGGTACAACCGATCGAAAAGTGGTTGGTTCGACTCTACGTGCTTCGAGGACTGGTTTAATACTGTCATAGTACCATATGCTAAAACAAAAACTGGCCGAAAAGTGATAATTGGTGACAATTTATCTTCACATTTTTCCGAATCCGTATTACAAACTTGTCAGGAGCTTAATATTATGTTCGTTTGCTTACCTCCTAAAACCACTCATTTACTCCAGCCGTTAGATGTTGCATTTTACGCGCCTTTAAAAAAATATTGGCGCGATGTATTGACACACTGGAAGAGGACTGAAGGACTTAAACATAAAACTTTAGTAAAAAGTTCATTTCCTATGCTATTGTATAGATTGCAGAATAAAATGAGAGAAAAGGGTTCAGAATCCAACAATTTAATTGCCGGGTTTAACAAATGCGGCTTATATCCCGTTAATTCTGAGCGACCAAAATCTCGATTGCCACACACAAATTCTATTTCGGAGGAACTAATTGAAAACACGGCATCTTCAGCTGTAATAGAAATATTAACAAATTTAAGAAATCCGACCCCGGCTCTTGAACAGCCTAAACGAAAAAGGAAGTGTAATGTTCCACCCGGGAAAAGTATTACTGCAGAAGACTTATTACGAGTGGAAAAACCGTCAATGATCAAATCTTGTCAAGGTAAAATAAAAACTATAAATAGATGTTCAGAAAAAAATAGAACAATTTCAAACAAAAGAGCTAGAAGTAATATCGATTATAACACCAGAGAATCACACATGCAGCCCATTGCAGGACCTTCGGGGCAATGTAAACGAACAACACTTCGTAAAGAAAATAAGGTAAATGAATCTGACTCCACCTATATAAGTTCAGAAGATGAATATCCAACTAAGAATAATAATAAGCCTCAAAAACCAATGTCAAGTTTTAAAGGAAAAGGTAAAGGCAAAAAAAATAAAATTCAGGCTCCTGCCGTTACAAAATCCAGAAGGAAAATAACTACAAGAAAGCGTAGCATTTCAACCACAAGTGTTTCGGATACAAGGAGTGTGCATAGTGACTCGGACCTACTAGATGTTGATTTCAATGACCACAGCTCAGATATTAGTAATAATAATGATCTTTCACCATTTATAAATCCGAAAACAAACAATAGTGACAAAATAGAAAATCAAAGGAAGATTACTGATGAAGAAATAGATGAAAAAGAAAAAAAAAAAATTTGCATATCACATGATACAATAAATGGTGGGATGAGTCATCAACACAGTGAAATTAAAGCTTTACCATCAATGGCCGAGATACGGAATGATTTTGATGATAAGGAAAACGGAAAGAAAGATAAACCCATAAGTGAAGTAAATGAAAAAACTCAAAGAAAACTCTGTGATGATCAATATAATGAAGTACCTCTTATCTTCTTTGATGATTTTGGGAGTGAAGAAATTGTAGGTGGAGATGATAATAATACTGTCTCACTTATTTCATTTAATGAAAAGGAACTATATAGTAAAGATATTATAAATGACAAAAAGTGTAGTGAAGTTATGGATAATGTTGAAAATGCGGATATGATTGTAAATAAAGAAAACCACTTCGAGAGCGGGAAAAAACTGACTATTATTAAGGAAGAAAGTTTAGAAAATGCGTTGAAAAACAAGAAAGTAGTCTTTAAGGACCTTAAGCCTGTATGTCTAAGCAGTTATATTGATATACCAAAGAAAAGTAAGCAAAAGCCTATTAAGTATGGAAAGAATTATTATAACGATAGACAAGAAATTTTAAAAGCATTGATGGATAGTGACTAA
- Protein Sequence
- MVRTYQRKFTNSRNGKNHSPYLSYCKEDLQNAIEEIQNGSLKLIEAANKYNIPKSTLSRKCRNKNCTQEKAGHPTLFSKDEEMAFIKYIQILSNWGFPLDSTDLRVFAQKYLNKLGKTVYSLKDNMPGVDWARNFMIRHKAEISNRNASNITSDRAKILPAVIDDFFSHYENTIEGVSPDCIINYDETNLTDDPGHKKFLFKRGCKYPERVINTTKTSISLMFTGTADGQLLPTYVVYKADHLWDQWLEGGPEGTRYNRSKSGWFDSTCFEDWFNTVIVPYAKTKTGRKVIIGDNLSSHFSESVLQTCQELNIMFVCLPPKTTHLLQPLDVAFYAPLKKYWRDVLTHWKRTEGLKHKTLVKSSFPMLLYRLQNKMREKGSESNNLIAGFNKCGLYPVNSERPKSRLPHTNSISEELIENTASSAVIEILTNLRNPTPALEQPKRKRKCNVPPGKSITAEDLLRVEKPSMIKSCQGKIKTINRCSEKNRTISNKRARSNIDYNTRESHMQPIAGPSGQCKRTTLRKENKVNESDSTYISSEDEYPTKNNNKPQKPMSSFKGKGKGKKNKIQAPAVTKSRRKITTRKRSISTTSVSDTRSVHSDSDLLDVDFNDHSSDISNNNDLSPFINPKTNNSDKIENQRKITDEEIDEKEKKKICISHDTINGGMSHQHSEIKALPSMAEIRNDFDDKENGKKDKPISEVNEKTQRKLCDDQYNEVPLIFFDDFGSEEIVGGDDNNTVSLISFNEKELYSKDIINDKKCSEVMDNVENADMIVNKENHFESGKKLTIIKEESLENALKNKKVVFKDLKPVCLSSYIDIPKKSKQKPIKYGKNYYNDRQEILKALMDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00637569; iTF_00017280; iTF_00445063; iTF_00445062; iTF_00445064; iTF_00301101; iTF_00301102; iTF_00302034; iTF_00302035; iTF_00302036; iTF_00302037; iTF_01230490; iTF_01230489;
- 90% Identity
- iTF_00017280;
- 80% Identity
- -