Pneb049653.1
Basic Information
- Insect
- Polia nebulosa
- Gene Symbol
- clz9
- Assembly
- GCA_951329385.1
- Location
- OX589609.1:21693131-21695683[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.7e-09 1.5e-06 29.7 0.0 3 36 27 61 26 67 0.91
Sequence Information
- Coding Sequence
- ATGGTGCGGACCTACCAACGAAAATTTACTAATTCACGCAACGGTAAGAATTATTCACCTTATCTGAGCTATTGCAAAGAAGATTTGCAAAACGCAATAGCAGAAATTCAAAATGGCTCACTGAAATTATTTGAGGCGGCTAATAAATACAACATTCCAAAGAGTACATTAAGCAGAAAATGTCGAAATATAAATTGCACACAAGAAAAAGCCGGACACCCTACTCTTTTTTCAAAAGATGAAGAGATGGCGttcataaaatacatacaaatactGAGTAATTGGGGGTTTCCACTAGATTCTACAGACTTACGCGTATATGCCCAAAAATACTTGAACAAACTAGGAAAAACCGTCTACAGTTTAAAAGACAATATGCCCGGTGTAGATTGGGCGCGAAATTTCATGATTAGGTATAAAGCTGAAATTTCCAATCGTAATGCATCAAATATCACAAGTGACCGCGCCAAAATTTCACCTGCTGTAATAGACGATTTTTTTTCGCATTATGAAAATACTATTGAAGGTGTCTCTCCTGATTGTATCATTAATTATGATGAGACTAATCTCACTGATGACCCGGGCcataagaaatatttatttaagagAGGTTGCAAATATCCTGAAAGGGTAATCAacactacaaaaacatttatttctttAATGTTTACTGGCACTGCCGATGGACAGTTATTGCCCATATACGTTGTTTATAAGGCAGATCATTTATGGGATCAATGGCTAGAAGGAGGGCCTGAAGGGACGAGGTACAACCGATCGAAAAGTGGTTGGTTCGACTCTACATGCTTTGAGGACTGGTTTAATACCGTCATAGTACCATATGTAAGAACAAAAACTGGCCGAAAAGTGATAATTGGAGACAATTTATCTTCACATTTTTCCGAATCCGTATTAAAAATTTGTCAGGAGCTTAATATTATGTTCGTTTGCTTACCTCCTAAAACCACTCATTTACTTCAGCCATTAGATGTTGCATTTTACgcacctttaaaaaaatattggcgcGATGTATTGACACACTGGAAGAGGACTGAAGGACTTAAACATAAAACTTTAGTAAAAAGTTCATTTCCTATGTTATTATATAGATTGCAGAATAAATTGAAAGAAAAGGGTTCAGAATCCAGCAATTTAATTGCCGGGTTTAACAAATGCGGTTTATATCCCGTTAATTCTGAGCGACCAAAATCTCGATTGCCGCACAATTCTATTTCGGAGGAACTAATTGAAGATACAGCATCTTCAGCTGTAATAGAAATTTTAACAAATTTAAGAAATCCAACCCCGGCTCATGAACAGCCTAAACGAAAAAGAAAGTGTAACGTTCCACCCGGAAAAAGCATTACTGCAGATGACTTATTACGATTGGAAAAACCGTCAATTATCAAATCCCGTcaaggtaaaataaaaacaataaatagatgttcagaaaaaaataaaacaatttcaaaCGAAAGAGATAGAAGTAATATCGGTTATAACACCAGAGAAACACACATGCAGCCCATTGCAGGACCTTCGGGGCAATGTAAACAAACAACACTTCGTAAAGAAGATAGGGGAAACGAATCTGATTCCACCTACATAAGTTCAGAAGATGAATATCCaactaagaataaaaataaacctcaaaaaccaATGTCAAATTTTAAAGGAAAAGGTAAAGGTAAAGGCAAGAAAAGTAAAATTCAGGCTTCTGCCGTTGCAAAGATCAGAAGgaaaataaatacaagaaaaCTTAGCATTTCAACCACAAGTGTATCGGATACAAGGAGTGTACATAGTGACTCGGACCTACTAGACGTTGATTTCGATGACCATAGCTcagatattaataataagaatgATCTTTCACCATCTATAATTCCGAAAACAGACAATAGTGACAAAATAGAAAATCAAAGGAAGATTACCGATGAAGAAATAGATGAAAAAGACGAAACAAAAAATTGCATATCACATGATACAATAAAAGGTGAGATGAGTCATGAATACCGTGTAATGAACTCTTTACCATCAATGACCGAGATACGgaaagattttgatgaaaagGAAAACGGGAAGAAGGATAAACCCAGAAatgaagaaaacgaaaaaaCTCAAAGAAAAGTCTGTGATAATCAATATAATGAAGTACCTCTTATCTTCTTTGATGAGTTTGGGAGTGAAGAAATTGTAGTTGGAGATGATGATAATACTGTCTCTCTTATAGCATTTAATGAAAAGGAATTATATAGTAAAGATATTATAAATGACAAAGAATGTAGTGAAGTTATGGATAACAATGAAAATGCGaatttaattgaaaataaagaaaactacTTCGAGAGCGGGAAAAAACTAACTATTATTAAGGAAGAAAGTCTAGAAAATGCGTTGAAAAACAAGAAAGTAGTCTTTAAGGACCTTAAACCTGTATGTCTAAGCAGTTATATTAATATACCAAAGAAAAATAAGCAAACacctaaatataaaaagaattattataacgacagaaaagaaattttaaaagcaTTGATGGATAGTGACTAA
- Protein Sequence
- MVRTYQRKFTNSRNGKNYSPYLSYCKEDLQNAIAEIQNGSLKLFEAANKYNIPKSTLSRKCRNINCTQEKAGHPTLFSKDEEMAFIKYIQILSNWGFPLDSTDLRVYAQKYLNKLGKTVYSLKDNMPGVDWARNFMIRYKAEISNRNASNITSDRAKISPAVIDDFFSHYENTIEGVSPDCIINYDETNLTDDPGHKKYLFKRGCKYPERVINTTKTFISLMFTGTADGQLLPIYVVYKADHLWDQWLEGGPEGTRYNRSKSGWFDSTCFEDWFNTVIVPYVRTKTGRKVIIGDNLSSHFSESVLKICQELNIMFVCLPPKTTHLLQPLDVAFYAPLKKYWRDVLTHWKRTEGLKHKTLVKSSFPMLLYRLQNKLKEKGSESSNLIAGFNKCGLYPVNSERPKSRLPHNSISEELIEDTASSAVIEILTNLRNPTPAHEQPKRKRKCNVPPGKSITADDLLRLEKPSIIKSRQGKIKTINRCSEKNKTISNERDRSNIGYNTRETHMQPIAGPSGQCKQTTLRKEDRGNESDSTYISSEDEYPTKNKNKPQKPMSNFKGKGKGKGKKSKIQASAVAKIRRKINTRKLSISTTSVSDTRSVHSDSDLLDVDFDDHSSDINNKNDLSPSIIPKTDNSDKIENQRKITDEEIDEKDETKNCISHDTIKGEMSHEYRVMNSLPSMTEIRKDFDEKENGKKDKPRNEENEKTQRKVCDNQYNEVPLIFFDEFGSEEIVVGDDDNTVSLIAFNEKELYSKDIINDKECSEVMDNNENANLIENKENYFESGKKLTIIKEESLENALKNKKVVFKDLKPVCLSSYINIPKKNKQTPKYKKNYYNDRKEILKALMDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00185247;
- 90% Identity
- iTF_00017280;
- 80% Identity
- -