Basic Information

Insect: Aulacorthum solani
Gene Symbol: prdm10
Assembly: GCA_008528875.1
Location: PVMI01076122.1:6096-14608[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.097 19 6.9 0.5 3 23 59 79 58 79 0.96

2 11 0.0055 1.1 10.9 0.5 2 23 94 115 93 115 0.95

3 11 0.00042 0.083 14.4 3.2 1 23 129 151 129 151 0.97

4 11 0.065 13 7.5 3.0 1 23 159 181 159 181 0.88

5 11 0.00093 0.18 13.3 0.3 1 23 187 209 187 209 0.96

6 11 0.0007 0.14 13.7 2.0 1 23 215 238 215 239 0.96

7 11 6.2e-05 0.012 17.0 1.2 3 23 245 265 243 265 0.98

8 11 2.1e-06 0.00042 21.6 1.8 1 23 271 294 271 294 0.95

9 11 0.11 21 6.8 0.4 1 23 334 357 334 357 0.90

10 11 0.0007 0.14 13.7 1.7 1 23 379 402 379 402 0.97

11 11 0.028 5.5 8.6 5.0 1 23 440 462 440 463 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.097	19	6.9	0.5	3	23	59	79	58	79	0.96
2	11	0.0055	1.1	10.9	0.5	2	23	94	115	93	115	0.95
3	11	0.00042	0.083	14.4	3.2	1	23	129	151	129	151	0.97
4	11	0.065	13	7.5	3.0	1	23	159	181	159	181	0.88
5	11	0.00093	0.18	13.3	0.3	1	23	187	209	187	209	0.96
6	11	0.0007	0.14	13.7	2.0	1	23	215	238	215	239	0.96
7	11	6.2e-05	0.012	17.0	1.2	3	23	245	265	243	265	0.98
8	11	2.1e-06	0.00042	21.6	1.8	1	23	271	294	271	294	0.95
9	11	0.11	21	6.8	0.4	1	23	334	357	334	357	0.90
10	11	0.0007	0.14	13.7	1.7	1	23	379	402	379	402	0.97
11	11	0.028	5.5	8.6	5.0	1	23	440	462	440	463	0.95

Sequence Information

Coding Sequence: ATGATGAGAACATCACCACCAACCTGCAAGCATATGACATTTAAAAGGAAATTATCCAATcgatttggtaaaaataatgcacAGTGTAATCTTTGCATCAATGCTCAGAATAACTCTAAAAACAACTATAGAATGAAATTAAGATCAAACAATAGCATTAAacATATTTGGCTGTGTATGTCCTGTGATTTGAAATTCTCAAAAcgtgaaacaattttaatacacatcAAATTGCACGAAGACGAGTTTGATGTCGAACGAGTAACGTTAACCGATACCAGTTGTCCGGAATGTAATTCTgagTTTCATCAAACCGAAGAACTAATTAAACACGTTTACGTGCACAGTTTCACAGATAACAGAATGGGCTTAGGTGGTACCTTTTACAACTGTTATCAGTGTGAGAGGAGATACAGGAATGCCATTCATCTAAGGGCTCATCAAACAAAACACAAGGAAAATGAACTCAAGCCGTACAAATGTAACATGTGCGATAAGCGTTTTTTGAACACTGTCGTCTTAACGTGTCACGTGCGCACCCATTTTGAGGGTGTAATTTACGACTGCCCCATGTGTCGTTTGACGTTTGTCGATTTGAAATCATTAAAGGGACACGTATATTCGCACGCGGTGAACAACATCTTCTATTGCCCGATGTGCCCACTCCAAttcaatacttataagttgATCAGAAAGCACATCCGAGCCCGGCATCATGGCATTGAGTTTGGTTGCGAATATTGCAATAGTTCGTTCAATAGTCGTTTCAATCTCAATTTACACATGCTCAGTCATTCGGACCAAAGGGATTTTCTATGCACCATGTGTGGTAAACAGTACAAGAGGAAAGACAAACTGAAGATACATATGAATAAAGTCCATTATTCCAAGAAAAAGCCATCgaaaacacaattaaaattagaagCTAGAGCGGAAAGGAAAGCACAACAAATTCAAATGaaaacaacGAAATCGATGTTGGAGTACGAAAGTTCAGAGTTCAGGTGTGATAAATGTTTGGTGGGCTTCAAAAGAAGAGGCGTTTACGTAAATCATTTGGTACTGAGACATCCCGAAATAAGTCTTGATTCTGTGCCGTCGCTCAACCAACCAGTCGTGCCTAAAGCCAAAATGTACATGTGTTTGTACTGTGATAAAATATACAAGACTAACGCTAAGCGGAAATCGcacatacttaaaaatcacCCGGATTGCGAACTCCCCGAAAAACCGACTGATAAAACGGTTACCATTGATGACGAGCCGCCCAGTCAAATTGATAGTAGCGCTGTTGGTGGCACTGCGTCATCTCAGGCCCATAGTTGTCAGTGGTGTTATAAACAATacgtgttaaaaaataaacttttaagacACCAACGTGCACATCACTACCACTTGTTGCCTCCATCCTTACAGGAACCGCAACCATCGAAAAAGCTCGgacataaagttaaaaaaatagagcAACCCCCTCAAACAGTTAATATTCAGTTCACTGATACGGATGGTTTCGAATTAACGGCCACCGACATACAGCTGGACAATCCAATCGAACCGGGCAGCATAATAGCCATCAAACGGCCCATAAAAAGCAATTCCGAGTACATGACGCAGGCCATGCGAGACTTGGGCTTGAGCCCGGCTGACGATGGTGTGAACGAGGAGCAGTATTACCGGATATTGGACACGCAGGGCGACGTGGCTTACGCTCAGGCCATCGATCCGCCGGTCGCCTTATTGACGTTTGACGGCCAGACCATTCAACAGGTGCTGTCTTCTTGCATTCCGGCTACGTTACCGATTGCTGACGGCTGCGATACAATGACGACATCGACCGGAGGCAACTGCACGGCGACGAGTGATGGTCTTCAGTAG
Protein Sequence: MMRTSPPTCKHMTFKRKLSNRFGKNNAQCNLCINAQNNSKNNYRMKLRSNNSIKHIWLCMSCDLKFSKRETILIHIKLHEDEFDVERVTLTDTSCPECNSEFHQTEELIKHVYVHSFTDNRMGLGGTFYNCYQCERRYRNAIHLRAHQTKHKENELKPYKCNMCDKRFLNTVVLTCHVRTHFEGVIYDCPMCRLTFVDLKSLKGHVYSHAVNNIFYCPMCPLQFNTYKLIRKHIRARHHGIEFGCEYCNSSFNSRFNLNLHMLSHSDQRDFLCTMCGKQYKRKDKLKIHMNKVHYSKKKPSKTQLKLEARAERKAQQIQMKTTKSMLEYESSEFRCDKCLVGFKRRGVYVNHLVLRHPEISLDSVPSLNQPVVPKAKMYMCLYCDKIYKTNAKRKSHILKNHPDCELPEKPTDKTVTIDDEPPSQIDSSAVGGTASSQAHSCQWCYKQYVLKNKLLRHQRAHHYHLLPPSLQEPQPSKKLGHKVKKIEQPPQTVNIQFTDTDGFELTATDIQLDNPIEPGSIIAIKRPIKSNSEYMTQAMRDLGLSPADDGVNEEQYYRILDTQGDVAYAQAIDPPVALLTFDGQTIQQVLSSCIPATLPIADGCDTMTTSTGGNCTATSDGLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01032414; iTF_01170122; iTF_00469165; iTF_00942160; iTF_01347504; iTF_00134805; iTF_01167959;
90% Identity: iTF_01032414; iTF_00942160; iTF_01167959;
80% Identity: -