Basic Information

Insect: Pentalonia nigronervosa
Gene Symbol: prdm10
Assembly: GCA_014851325.1
Location: scaffold:34459-50478[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.14 16 6.7 0.5 3 23 155 175 154 175 0.96

2 11 0.0039 0.45 11.7 0.1 3 23 191 211 189 211 0.95

3 11 0.00026 0.03 15.3 2.6 1 23 225 247 225 247 0.97

4 11 0.096 11 7.3 3.0 1 23 255 277 255 277 0.88

5 11 0.0014 0.16 13.1 0.3 1 23 283 305 283 305 0.96

6 11 0.001 0.12 13.5 2.0 1 23 311 334 311 335 0.96

7 11 9.1e-05 0.011 16.8 1.2 3 23 341 361 339 361 0.98

8 11 3.1e-06 0.00036 21.4 1.8 1 23 367 390 367 390 0.95

9 11 0.58 67 4.8 0.5 1 23 430 453 430 453 0.89

10 11 0.00073 0.084 13.9 2.1 1 23 475 498 475 498 0.97

11 11 0.042 4.8 8.4 5.0 1 23 535 557 535 558 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.14	16	6.7	0.5	3	23	155	175	154	175	0.96
2	11	0.0039	0.45	11.7	0.1	3	23	191	211	189	211	0.95
3	11	0.00026	0.03	15.3	2.6	1	23	225	247	225	247	0.97
4	11	0.096	11	7.3	3.0	1	23	255	277	255	277	0.88
5	11	0.0014	0.16	13.1	0.3	1	23	283	305	283	305	0.96
6	11	0.001	0.12	13.5	2.0	1	23	311	334	311	335	0.96
7	11	9.1e-05	0.011	16.8	1.2	3	23	341	361	339	361	0.98
8	11	3.1e-06	0.00036	21.4	1.8	1	23	367	390	367	390	0.95
9	11	0.58	67	4.8	0.5	1	23	430	453	430	453	0.89
10	11	0.00073	0.084	13.9	2.1	1	23	475	498	475	498	0.97
11	11	0.042	4.8	8.4	5.0	1	23	535	557	535	558	0.95

Sequence Information

Coding Sequence: ATGTGTTTTGTGCAACCAGCAAAAACGAAACAAGAACAGAACATGATTGTTGATCAAATCGGGGATTATCTTTATTTTACTACTACAAGAGCAATTTACCAACGAGAACAGTTACTCGTTGGCTACAGCACATTTTATGCACATAAACGAGGCTTACATGTATTACCTACAGTAAACAATCAGGGGATTTCTACTCTTGCACGAAAATCGTTTAAATCGATGAAAATATCCCAGGAGTTGAACAAACAGTCTGAACATTTTAGAAATAATTTACCGAGCAAAGGAAAAATGATGAGAACACCATCAACGACTTGCAAGCATATGACAATAAAAAGAAGATTATCCAATAGATTTGGTAAAAATAATGCTCAGTGTAATCTTTGCGTTAATGCGCAGAATAATTCGAAAAATGCCTATAAAATGAAATTAAGATCGAACAATAATATTAAACATATTTGGTTGTGTATGTCCTGTGATTTGAAATTCTCAAAACGCGAAACAATTTTAATACACATTAAATTGCATGAAGACGAGTTTGATGTCGAACGAGTAACGTTAACCGATACCAATTGTCCGGAATGTAATTCTGAGTTTTATCAAACCGAAGAACTAATTAAACACGTTTACGTGCACAGTTTCACAGATAACCGAATGGGCCTAGGTGGTACCTTTTACAACTGTTATAAGTGTGAAAGGAGATACAGGAATGCCATTCATTTGAGGGCACATCAAGCAAAACATAAGGAAAATGAACTCAAGCCGTATAAATGTAACATGTGTGATAAGCGTTTTTTGAACACTGTCGTTCTAACGTGTCACGTGCGCACCCATTTTGAGGGTGTAATTTATGACTGTCCCATGTGCCGTTTGACGTTTGTCGATTTGAAATCATTGAAGGGACACGTATATTCGCACGCGGTGAACAACATCTTCTATTGCCCAATGTGCCCACTTCAATTCAATACTTATAAGTTAATCAGAAAGCACATCCGAGCCCGGCATCATGGCATCGAGTTTGGTTGCGAATATTGCAATAGTTCATTCAATAGCCGTTTCAATCTCAATTTACACATGCTCAGTCATTCGGACCAGAGGGATTTTTTGTGCACCATGTGTGGTAAACAGTACAAGCGGAAAGACAAACTGAAGATACATATGAATAAAGTTCATTATTCTAAGAAAAAGCCATCGAAAATTCAATTAAAATTAGAAGCTAGAGCGGCGAGAAAAGAACAACAAATTAAATTGAAAACAACAAAAATAATGTTGGAATACGAAAGTTCAGAGTTCAGGTGTGATAAATGTTTGGTAGGTTTCAAAAAAAGAGGCGTTTACGTCAATCACTTGGTACTGAGACATCCCGAAATAAGTCTTGACTCTGTGCCGTCGCTCAATCAACCAGTCTTGCCTAAAGCCAAAATGTACATGTGTTTGTACTGCGATAAGATGTACAAAACTAACGCAAAGCGAAAATCGCATATACTTAAAAATCATCCGGATTGTGAACTACCCAAAAAACCGACTGATAAAACGATTACCATTGATGACAGTCCTTCCAATCAAGTGGATTCTAACAATGTCGCCACTGCTTCATCTCAGGCGCACAGTTGCCAGTGGTGTTACAAACAATACGTGTTAAAAAATAAACTTTTAAGACATCAACGAGCCCATCACTACCACTTGTTGCCTCCGTCCCTACAAAAACCACAACCGTCAAAAAAGCTTGGGCATAAAGTAAAAAAAGTTGAACAACCCCCTCAAACGGTTAATATTCAGTTTACTGATACGGACGGTTTTGAATTAACGGCCACCGACATACAGCTGGACAATCCAATCGAACCGGGCAGCATAATAGCCATCAAACGGCCCATAAAAAACAATTCCGCGTACATGACGCAGGCCATGCGAGACTTGGGATTGAGTGCGTCCAGCGAAGGTCTGAACGAGGAGCAGTACTACCGAATATTGGACACGCAAGGCGACGTGGCTTACGCGCAGGCCATCGATCCGCCGGTCACCTTACTCACGTTCGAGGGCCAGACCATTCAACAGGTGTTGTCTTCGTGCGGCACAGCTATGTTGCCGACCACTGACGGCCGCGCGACAACGACGACGACCGGAGGCAACTGCACGACGACGACTCAGGGTCTTCAGTAG
Protein Sequence: MCFVQPAKTKQEQNMIVDQIGDYLYFTTTRAIYQREQLLVGYSTFYAHKRGLHVLPTVNNQGISTLARKSFKSMKISQELNKQSEHFRNNLPSKGKMMRTPSTTCKHMTIKRRLSNRFGKNNAQCNLCVNAQNNSKNAYKMKLRSNNNIKHIWLCMSCDLKFSKRETILIHIKLHEDEFDVERVTLTDTNCPECNSEFYQTEELIKHVYVHSFTDNRMGLGGTFYNCYKCERRYRNAIHLRAHQAKHKENELKPYKCNMCDKRFLNTVVLTCHVRTHFEGVIYDCPMCRLTFVDLKSLKGHVYSHAVNNIFYCPMCPLQFNTYKLIRKHIRARHHGIEFGCEYCNSSFNSRFNLNLHMLSHSDQRDFLCTMCGKQYKRKDKLKIHMNKVHYSKKKPSKIQLKLEARAARKEQQIKLKTTKIMLEYESSEFRCDKCLVGFKKRGVYVNHLVLRHPEISLDSVPSLNQPVLPKAKMYMCLYCDKMYKTNAKRKSHILKNHPDCELPKKPTDKTITIDDSPSNQVDSNNVATASSQAHSCQWCYKQYVLKNKLLRHQRAHHYHLLPPSLQKPQPSKKLGHKVKKVEQPPQTVNIQFTDTDGFELTATDIQLDNPIEPGSIIAIKRPIKNNSAYMTQAMRDLGLSASSEGLNEEQYYRILDTQGDVAYAQAIDPPVTLLTFEGQTIQQVLSSCGTAMLPTTDGRATTTTTGGNCTTTTQGLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00184823;
90% Identity: iTF_00184823;
80% Identity: -