Basic Information

Insect: Sipha maydis
Gene Symbol: prdm10
Assembly: GCA_034509805.1
Location: JASXSY010000487.1:47156-55931[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.02 3.7 9.4 0.6 3 23 144 164 142 164 0.95

2 10 0.00012 0.023 16.3 3.3 1 23 178 200 178 200 0.98

3 10 0.0074 1.4 10.7 3.4 1 23 208 230 208 230 0.97

4 10 0.0013 0.25 13.1 0.3 1 23 236 258 236 258 0.96

5 10 0.00099 0.18 13.5 2.0 1 23 264 287 264 288 0.96

6 10 0.00022 0.041 15.5 1.3 3 23 294 314 292 314 0.98

7 10 3.1e-06 0.00057 21.4 1.8 1 23 320 343 320 343 0.95

8 10 0.1 19 7.1 0.5 1 23 383 406 383 406 0.91

9 10 0.00074 0.14 13.9 1.8 1 23 428 451 428 451 0.96

10 10 0.04 7.4 8.4 5.0 1 23 483 505 483 506 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.02	3.7	9.4	0.6	3	23	144	164	142	164	0.95
2	10	0.00012	0.023	16.3	3.3	1	23	178	200	178	200	0.98
3	10	0.0074	1.4	10.7	3.4	1	23	208	230	208	230	0.97
4	10	0.0013	0.25	13.1	0.3	1	23	236	258	236	258	0.96
5	10	0.00099	0.18	13.5	2.0	1	23	264	287	264	288	0.96
6	10	0.00022	0.041	15.5	1.3	3	23	294	314	292	314	0.98
7	10	3.1e-06	0.00057	21.4	1.8	1	23	320	343	320	343	0.95
8	10	0.1	19	7.1	0.5	1	23	383	406	383	406	0.91
9	10	0.00074	0.14	13.9	1.8	1	23	428	451	428	451	0.96
10	10	0.04	7.4	8.4	5.0	1	23	483	505	483	506	0.95

Sequence Information

Coding Sequence: ATGTAtggtatactaaaaatattcataaatataggTTTGGAAAATAATCATGGAATTTCCCGAAAAACATTCAAATCATTGAAATCAACTTACGAGCCTAATAAGCAGACTGACAGTTCGAAGAATACCTTAACGAACAAAGGAACTATGatgaaaACTTCCACAACAATTTGCAAACACATGACGAAAATAAGGAAGCTATCCAATCGGTTTGGTAAAAACAACACTCAGTGTAATCTTTGCATCAACGCGCAGAATAATTCTAGAAATGCGTtcagaacaaaattaaaatcaaacagtTCAGTTAAAAATATTTGGGTATGTGTTGcttgtgatttaaaatttttaaagcgAGAAACGATTTTAATACATAGCAAGTTGCACGAAGATGAGTTCGATGTCGAGCAAGCAACATTAACAAATACCATTTGTCCAGAATGTAGCTCTGAGTTTCACCATGCTGAGGAACTCGTAAAACACGTTTACGTCCACAGTTTCACGGGTAGTGAATTGAGCTTGAGCGGGACAGTTTACAATTGCTACCAATGCGATAGAAGATACAGGAATGCAATTCACTTAAAGGCTCATCAAAGCAAACACAAAGAAAACGAACTCAAACCATACAAATGCAATATGTGTGATAAGCGCTTTATGAACACGGTTGTCCTGACGTGTCACGTACGCACTCATTTCGAGGGTGTAATTTACGACTGTCCCATGTGCCGCTTGACGTTTGTCGATTTGAAATCATTGAAGGGACATGTCTATTCACACGCGGTGAACAATATCTTCTATTGTCCAATGTGTCCACTAcaatttAATACGTACAAACTGATCAGGAAACATATCCGGGCCCGGCACCACGGCATTGAGTTTGGTTGCGAATATTGTAGCAGTTCATTCAACAGCCGTTTCAATCTTAATTTACACATGCTCAGACATTCGGACCAAAGAGATTTTTTGTGCACTATGTGTGGTAAGCAGTATAAGAGAAAAGACAAATTAAAGATACACATGAACAAAATTCATTTCTCCAAGAAAAAACCGTCAAAAACCCAGTTAAAATTAGAGGCCAGGGTTGAAAAGAAAGCAAAACTGATTCAgttgAAAACTACGAAATCTATGATAGAGTATGAAAATTCAGAGTTCAGATGCGAAAAGTGTTTGGTTGGATTTAAAAGAAGAGGAGTATTTGTTAATCATCTAGTGTTAAGACATCCGGAAATAAATCTCGACTCTGTTCCATCGCTCAATTTACCAGTTGTGGCCAAAACCAAAATGTACATGTGCCTGTACTGtgataaaATGTACAAGACTAACGCTAAACGAAAATCACACATAATCAAAAACCATCCAGATTGCGAACTTCCTGAAAAGCCGACTGACAAGACTGTTACCATTGACGATCAGGCTGGTAGCGCCAACGCGTCATCGTCGTCTCAGGTACATAGTTGCCAGTGGTGTTACAAACAGTacgtgttaaaaaataaacttttgagACATCAACGGGCACATCATTGTCACCTGTTGCCTCCTTCTCTTCGAGAACCGCAGCCATCGAAAAGACtaggaaataaaactaaaaaaattgatcaacCAGTATTCGAATCAGATCAACAGCCGCAAACAGTAAACATTCAGTTTACGGATACCGACGGGTTTGAATTAACAGCCACTGACATCCAGCTGGATAATCCGATCGAACCGGGCAGCATAATAGCCATCAAACGACCCATAAAAGACAACTCGGAGTTCGTGTCGCAAGCCATGAGGGACTTGGGCATAAGCACGGTTGACGACGACCTGAACGAGGAACAGTACTACCGGATACTGGACACTCAGGGAGATGTGGCTTACGCGCAGGCCATCGATCCGACGATCGCATTGCTCTCGTTCGACGGCCAGACCATTCAACAGGTGTTGTCCTCGGGCGCCCCGGCTCCAACGACCGTCGGCCACTCCACGATTGTTCCGCCGACGGCCGTACACCACCaccaccagcagcagcagcagccgtTACATCATCTGCCTACGGTCACCGGTACTCATCCGTCCACGGCGCAGTTGTTGTCGCCATCGGACGTCATCGTCGTGCACACCGAGTCCACCGCGAGCGGCCGTCTAAAATTCTAG
Protein Sequence: MYGILKIFINIGLENNHGISRKTFKSLKSTYEPNKQTDSSKNTLTNKGTMMKTSTTICKHMTKIRKLSNRFGKNNTQCNLCINAQNNSRNAFRTKLKSNSSVKNIWVCVACDLKFLKRETILIHSKLHEDEFDVEQATLTNTICPECSSEFHHAEELVKHVYVHSFTGSELSLSGTVYNCYQCDRRYRNAIHLKAHQSKHKENELKPYKCNMCDKRFMNTVVLTCHVRTHFEGVIYDCPMCRLTFVDLKSLKGHVYSHAVNNIFYCPMCPLQFNTYKLIRKHIRARHHGIEFGCEYCSSSFNSRFNLNLHMLRHSDQRDFLCTMCGKQYKRKDKLKIHMNKIHFSKKKPSKTQLKLEARVEKKAKLIQLKTTKSMIEYENSEFRCEKCLVGFKRRGVFVNHLVLRHPEINLDSVPSLNLPVVAKTKMYMCLYCDKMYKTNAKRKSHIIKNHPDCELPEKPTDKTVTIDDQAGSANASSSSQVHSCQWCYKQYVLKNKLLRHQRAHHCHLLPPSLREPQPSKRLGNKTKKIDQPVFESDQQPQTVNIQFTDTDGFELTATDIQLDNPIEPGSIIAIKRPIKDNSEFVSQAMRDLGISTVDDDLNEEQYYRILDTQGDVAYAQAIDPTIALLSFDGQTIQQVLSSGAPAPTTVGHSTIVPPTAVHHHHQQQQQPLHHLPTVTGTHPSTAQLLSPSDVIVVHTESTASGRLKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00184823;
90% Identity: -
80% Identity: -