Apur004489.1
Basic Information
- Insect
- Augochlora pura
- Gene Symbol
- -
- Assembly
- GCA_028453695.1
- Location
- CM052107.1:5576405-5580666[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.5 1.1e+02 3.4 6.3 2 23 243 265 242 265 0.96 2 20 0.43 31 5.1 2.0 1 23 312 334 312 334 0.97 3 20 8.9 6.3e+02 1.0 2.7 1 23 383 405 383 405 0.94 4 20 0.057 4 7.9 0.2 1 19 461 479 461 481 0.93 5 20 0.00083 0.059 13.7 0.4 1 23 522 544 522 544 0.93 6 20 0.0017 0.12 12.7 0.1 1 23 592 614 592 614 0.97 7 20 0.00068 0.048 14.0 0.1 1 23 620 642 620 642 0.97 8 20 2.7e-06 0.00019 21.5 0.3 2 23 686 708 686 708 0.96 9 20 0.096 6.7 7.2 1.7 3 23 717 738 717 738 0.94 10 20 1.8e-05 0.0012 19.0 0.3 2 23 746 768 746 768 0.97 11 20 0.00012 0.0087 16.3 0.1 1 23 776 798 776 798 0.94 12 20 0.032 2.2 8.7 0.4 1 20 858 877 858 877 0.97 13 20 0.00065 0.046 14.0 0.1 1 23 895 917 895 917 0.98 14 20 3.8e-05 0.0027 17.9 0.9 1 23 935 957 935 957 0.97 15 20 0.00039 0.027 14.7 6.9 1 23 979 1002 979 1002 0.94 16 20 0.01 0.71 10.3 1.6 2 23 1062 1084 1061 1084 0.95 17 20 0.25 17 5.9 1.1 3 23 1121 1142 1119 1142 0.90 18 20 0.0057 0.4 11.1 0.1 1 23 1149 1173 1149 1173 0.96 19 20 0.0059 0.41 11.0 1.2 1 23 1178 1201 1178 1201 0.97 20 20 0.046 3.3 8.2 2.3 2 23 1231 1253 1231 1253 0.94
Sequence Information
- Coding Sequence
- ATGGACAAGGTGGTGGTGTTGCAAAGAATGGAAAATGTGTGCAGGCTTTGCCTTTCCGAAGACGAGCCGAAATTGTCGGTGTTCGGGGCGCAAGAAACTCCGGTATCACTGGCCACAAAGATACAAGCCTGCCTATCGATTCAGATTTTAGCCACGGACAGGTTGTCCACGCAGATATGTGCACAGTGTGTTAAAAATGTGAATCAGTGGCATAATTATAAGGAGACATGTCTTCGATCACAAGATAAGTTACATCAATGGTTGGAAAAACGTCAACTAGCGAGCCCCGTGGTTGTGACAATCAAAGATGAACCTGTAGATCTAGACTTTTTGGAAGACAATGTTGAGGTCCTTTCCGAATCTTCCATCGCATCGGAACTGGAGTCTACTAACGTCGACGAAAGTTTGGATGACTCTGCAAACATGCTTCATGTCCAAGAGATAAGCGATGATGAAGCGGATGATGCAAGAGTTCCACCAGCTTTAACAAAACCTTTCGAAACACGTATAAAGACAGAGCCACCAGAGGACTGTGATACAGATTGTACTATAGAGATAGAGTCGATTACTGGCAGCGAGCTGGTGTTAAACCCCCTTTCCAACAAAGAAGATAGAATCATGGAAGCTGATTCTACGCAAAAGTCCAATGCATCAGCATCGGCGTCTAAAAAGAAACTTAGAAGAGGTCCCCATACACATTACAGGGGACCGCGTGCATTTAAGCAAAAGTGTTTGCATTGTCAAATCTTTTTGCATTCTAAATATACTTATACAAAGCACATGGAACGATTTCATTCGGAGAAGCAAAATGGTAACGCCGATGAGCAGGTGAAAATTGAAGAAGTTGAAGATCTGGAGGAGGAGCTATTGAGTATGGAGAAAGACGCGCCTCTGACTCAGGTGCAACAGAATATAATCAGCCAGCTGAAAACGTTCTCGTGTTATTCCTGTGAGCAATTATTCACCGACCGCAGAACTACACTTTCTCATATACGTCAGCACATGCCGGATCTAAGACCGTACACTTGTATCGCATGTTTAACCGAGTTCCCTGATCGCTCGATGTACAAGCTGCATTGCGGCGCGTCTTTCGAATGTGCAATGAAAATTGCTCTAGTAATACCAAACCAAGGCGAGGAGAAATATTTCACATGCAACATGTGTTTGCGCTCTATGCCAAACAGAAAGGAATTGCTCTGCCATCTTTCAAAACACTCTGACAAACAGTACCAACAGTTAGTGAAGCCATCGCGATCGCCTCCTAAACTGAAACCAATTTCTCCTCTGCCAGCTGCTAAACAAGAGTCCCCTACAAAGAAATCAATCGCAAGCAGTCCGGATGTCCCGCATCCATACAAAAACGGGGACCCGGCACATAATCATATTTGCGATTTGTGCGGCATGATCTACAGATACAAGCCTAACATGCTGAAGCATAAAGACTTGTGCCAGCGTTTACAGCCGGATCATCGAGTTTGCTACAGGTGTATGCACTGTGGAATGACCTATTTGGTGTTTAAGAAGTTCCACAACCATATCACCCAAGACCATAAAAAGAAAGACTTTTTCTGTTCCGAATGTGGCGCTAAATTCAGATCTCCCAGCGAATACTTAATGCACTACGATGGGCATCGTGGTAAAATAAACAAAAAACCGGTATCGGACAAGAACGACTCGAATGTCACGAGTCCCCAGAATTTCTCACCGTCTATCAAAGATTGGGACACGTTTGAGGCTGAAATGAACGACCGCAGGTTATCCGACAGCAACCGATACAGCTGTGCTTTGTGTAATTTGGAATTTGCTACCAGAGGCGAGCTGGCGGAGCACAGGAACCTTCATCTGAAGGTAAAGATTTATTCTTGCGTGATCTGTCGTAGCATGTTTAGCAGTGCGGGCGCTTTGGAGATTCACATGAAGGATCACGGCATTGAGGATCCCGGCGAGAGAAACGCCAACAGCTCGTGCGTAGAGTACGGAACTATAAACGACAGTTCAGAGGATTGCAAGCTGTTGAATGTCAGCGCCACCTCAGACCCGGGTACTAAAAAGAACGAATGCCGCGAATGCGGCAAGGTATTCTCGAATTATGCGAACGTCAGACGGCACATACGTAACATCCACAAGACGAATAAGTATCGCGTCGGTTGTCCTCAATGCCCTCGGAAATTTAAGAGCAAGGAGGTCTGCAACAGGCACGTTGCGACCGAGCACAAGACAGGCAAAACCATGCGCCAATGTCCCCAGTGCCCTAAGAGCTTTGTCTTCCAAGCCAACTTGAACCTTCATTTTCAGACCGCTCACAAGAACAAGAAGATCGGCGGCTACGAGTGCGACATCTGCGGCAAGACGTTCCAAGAGGAGGCATCTCTCAAAATCCACCGGGGATGGCACAACAGAACGAACTCCAGGCTGAGCTTGCGGAAACCAGCGGCGATCGAGGTAGACCACAAGCTTGCCAAGGATCCATTGGCGATTAAACCCGAGGATTTGTACAACGCCAGCCCTGATAAACCGGCCAGAGCAAGAAAATCGTTCCCTAACACGCCGCCTGTGAAGCCCGAGGGTAAATTCCAGTGTCAGGTATGCAACGACAAATTCAACGACGTCACCGAGCTGAGGAAACACTTGTGGGACATACACTGCGCGCACAAAACCGAGAAAACGTTCATGAACGACGACTACACCTGCGACATCTGCAACAACATCTACCCGGACAAAGAGACCCTGGACACTCATATGAATTGGCACAAGTCGTTCACGAGCCTGAGCCGCGTCAGGAGAGCTAGGCACCAGGGTAACTTCCCCTGCGACATCTGCGGAAAATTCTACAGTTCGAAGAAGGTGCTATGGAGACACAAGAAGCTGCATAAGGCGACCAGTCTCGCGGCCGCTACCCTGCAATCGGCGAATAGAAAGCCGTTGCCGAATCAGCACATTTGCACCATTTGTCACAAGATCTTCTGCAGCAAACAGTCGTTGCAACGTCACAGGATGAACATCCACAGCGAGATGTCTGGCCAGCCGCAGACAATGTTCTCCAACAAGAGGAGGCTGTCCCTGGAGGAGCCCAGCGCGAAGAAGATGAAACTGGAGGAGGAAGAGGAAGAGGAAGAGGAAGAGGAGATCCTGCAGAAACCGAACATAGTCGTAAACACGGTGGCCAGCGGTAAGAAGCCGGTGATGTGTCACGTTTGCAGGAAGTTCTTCGCGAACATGAGCGTATTGTACAAACACAAGCAAGTGATGCACAGCAAGTCGACCCGGTCGGCGAAGGCCGCGTCGAAACCGTCCGCGCCCCCGGCCACGGCCACGATCAACCAATGCATTCCGGTGCCAGGATCCGATGGCAAGGTCTGCTGCAACATCTGTTACAAGGCGTTCAACGCCATACCCAGCCTGCGCCAGCACTTCACCATCAAGCACAAGAACACGCCGCCCAAGTTCGCGTGTCACATCGACGGCTGCAAGATGATATTCCCGTCGGCGGCGGCCCTGAGGAACCACGAGATGTCCCACAACAACACGATCTTCAACTGCAACCTGTGCGGCCGTCACGTGTTCAACAGGCAGGCGATGACCGATCACATGCTGACGGTGCACAACACCGTCTACGACGCCGAGAAGAGCAAGAACTTTCACCGTGAAACAGACCTGACCCTTTACGTGGTGGAGAACGCGGTCGACGCGACCTGCCCCCATTGCAAGATCAAGTATCCCAACAACAGAGCCATGAAGATCCACTACTTCAAGTTCCACGACTACGCCAACTAA
- Protein Sequence
- MDKVVVLQRMENVCRLCLSEDEPKLSVFGAQETPVSLATKIQACLSIQILATDRLSTQICAQCVKNVNQWHNYKETCLRSQDKLHQWLEKRQLASPVVVTIKDEPVDLDFLEDNVEVLSESSIASELESTNVDESLDDSANMLHVQEISDDEADDARVPPALTKPFETRIKTEPPEDCDTDCTIEIESITGSELVLNPLSNKEDRIMEADSTQKSNASASASKKKLRRGPHTHYRGPRAFKQKCLHCQIFLHSKYTYTKHMERFHSEKQNGNADEQVKIEEVEDLEEELLSMEKDAPLTQVQQNIISQLKTFSCYSCEQLFTDRRTTLSHIRQHMPDLRPYTCIACLTEFPDRSMYKLHCGASFECAMKIALVIPNQGEEKYFTCNMCLRSMPNRKELLCHLSKHSDKQYQQLVKPSRSPPKLKPISPLPAAKQESPTKKSIASSPDVPHPYKNGDPAHNHICDLCGMIYRYKPNMLKHKDLCQRLQPDHRVCYRCMHCGMTYLVFKKFHNHITQDHKKKDFFCSECGAKFRSPSEYLMHYDGHRGKINKKPVSDKNDSNVTSPQNFSPSIKDWDTFEAEMNDRRLSDSNRYSCALCNLEFATRGELAEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIEDPGERNANSSCVEYGTINDSSEDCKLLNVSATSDPGTKKNECRECGKVFSNYANVRRHIRNIHKTNKYRVGCPQCPRKFKSKEVCNRHVATEHKTGKTMRQCPQCPKSFVFQANLNLHFQTAHKNKKIGGYECDICGKTFQEEASLKIHRGWHNRTNSRLSLRKPAAIEVDHKLAKDPLAIKPEDLYNASPDKPARARKSFPNTPPVKPEGKFQCQVCNDKFNDVTELRKHLWDIHCAHKTEKTFMNDDYTCDICNNIYPDKETLDTHMNWHKSFTSLSRVRRARHQGNFPCDICGKFYSSKKVLWRHKKLHKATSLAAATLQSANRKPLPNQHICTICHKIFCSKQSLQRHRMNIHSEMSGQPQTMFSNKRRLSLEEPSAKKMKLEEEEEEEEEEEILQKPNIVVNTVASGKKPVMCHVCRKFFANMSVLYKHKQVMHSKSTRSAKAASKPSAPPATATINQCIPVPGSDGKVCCNICYKAFNAIPSLRQHFTIKHKNTPPKFACHIDGCKMIFPSAAALRNHEMSHNNTIFNCNLCGRHVFNRQAMTDHMLTVHNTVYDAEKSKNFHRETDLTLYVVENAVDATCPHCKIKYPNNRAMKIHYFKFHDYAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00966173; iTF_00184094;
- 90% Identity
- iTF_00184094;
- 80% Identity
- -