Apur008155.1
Basic Information
- Insect
- Augochlora pura
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_028453695.1
- Location
- CM052106.1:35610580-35612742[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.1e-114 8.1e-110 366.6 34.4 1 300 29 328 29 328 0.97 2 3 0.0041 64 2.5 3.8 122 172 328 378 326 387 0.91 3 3 0.043 6.8e+02 -0.9 5.7 194 238 359 402 345 403 0.58
Sequence Information
- Coding Sequence
- ATGGAGGCTGCTATAGCTGGACGTAGGCGGACCACTGCAAGGCATTCGGCAGAGGATCAAGCACTTGATCAGATAGCCAAGGAGGCAGAAGCTAGATTAGCTGCAAAGAGACATGCAAGAGCTGAAGCAAGAGAAATACGAATGCGTGAATTAGAAAGACTACAAAAAGAGGCAGAAGAGAATGCGGATAGAGTTTATGACATGTGTTCCGCCGACGTTAATAGGACAATGAGAGTAACTCCAGACTCTGTAAGGACGACGCGTCTCCTTACGAATTCCAACAATTTTCAATCCAGTCGTAGGTCTTCTGAGGACTCTTTAGAAGATGCAGGCTTAAGTAGAGATCTCAGGTTAGAACTGAAGGAGTTTGAAGAGAAATTTAGAAAGGCTATGATAGCAAATGCTCAGTTAGACAATGAAAAGTCTTCTTATGCCTATCAAGTTGATTTATTGAAAGACAAGTTGGAAGAATTAGAGGAAACAGTTGCACAACTTCGTAGGGAACTTCGAGAGAAGAATCGAGAATCTGAACAGTTGAAAAGAATCAGTCAAAGATTGAAAGAAGATTTAGATATATGCCATGCACAATTAATAGAAAGAGATACGCTTATACAAGAGAATGGTTTAGTTATTCTTGACGATGAAGAGAGTGATGAAAACGAAAATAACGATATTGAAAACGGTCCGCGTCCAAGACGAAGAGTACTAGTCAGTACAGAAGCAGCAGAGTTGTTGCAAAATGTTGGGAAAGGTTCATTAGATGTTCGACTGCGAAAATTCGCTTCTGAAAAAAAGGAATTACAAGACGAAATTCGGCATTTAAGATTGGAATTAGAGGAAACCAGGAATCGTATTAGGTCGGAGAAATCACCTGGTTCAGTATTAGGTTGTCTATCAGATTCTGAGGACGTGCAACGAGAAGCAAATAAATTGCTAGCCGATTACAAGTTCAAGTTACAAAAAGCAGAGCAGGATATGTCGACTTTACAAGCCACTGTAGCCAGGCTAGAGAGTCAAGTAATACGTTACAAGTCAGCCGCAGAAGCATCAGAGAAGGCGGAAGACGAATTAAAAGTTGAAAAACGAAAACTTCAAAGAGAAGTCAGAGAGACCCAAGGCCGCGTCGAAGAATTAGAGACTGCAAATTCACATTTACAAAGGCGACTAGATAAACTTAAAAATGCAAAATCGACTCTGTTGAAAGAGCTTTGA
- Protein Sequence
- MEAAIAGRRRTTARHSAEDQALDQIAKEAEARLAAKRHARAEAREIRMRELERLQKEAEENADRVYDMCSADVNRTMRVTPDSVRTTRLLTNSNNFQSSRRSSEDSLEDAGLSRDLRLELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETVAQLRRELREKNRESEQLKRISQRLKEDLDICHAQLIERDTLIQENGLVILDDEESDENENNDIENGPRPRRRVLVSTEAAELLQNVGKGSLDVRLRKFASEKKELQDEIRHLRLELEETRNRIRSEKSPGSVLGCLSDSEDVQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQGRVEELETANSHLQRRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_00633626;
- 80% Identity
- -