Apur008316.1
Basic Information
- Insect
- Augochlora pura
- Gene Symbol
- -
- Assembly
- GCA_028453695.1
- Location
- CM052106.1:38027261-38033799[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2.8 6.3e+03 -3.2 0.1 28 40 76 88 76 91 0.64 2 5 4.3e-13 9.7e-10 37.8 0.0 1 39 310 349 310 353 0.90 3 5 1.3e-12 3e-09 36.3 0.1 2 39 365 402 364 405 0.94 4 5 4.8e-19 1.1e-15 56.9 0.0 2 45 420 464 419 464 0.97 5 5 5.5e-19 1.2e-15 56.7 0.1 1 42 471 513 471 514 0.97
Sequence Information
- Coding Sequence
- ATGCTGCAGGAGGATGTGAAAAAGGGTTTCCTACTGGTTACTTCATATTTGCGATTGCCGATGAGAATGAAAGACGTTTACAGGACATTTCTGGTTTTGTTGCAGTCATTATTGAAAACGGCTGATCAGCTGAAGATCAAGGGCCTCTGCGAGGTGCCGGAGAGCAGGGACGGTCCGCCATCGGTGAGCTTGAGCTCGCCTCCACGGGAACCGGGCACTCCCAGGATAAATTTCAGCAAGTTAAAGAGGCGGTACAAACGAGCGAGGACCACGTTCGAGCCTCGCGCAACGGATTCGAGGCACTACGACAGATACAAAGAGGAGGAATCGAACGGGAATTACAATCCGGAGAACAAAGAGAATCACAGGGACTGGCAGACCGAAGATGAAGATTGTACGGAGGGCACAACGGCAACAGTAGTCTTGGAAACGTGCCAGCGGACCAATAACAATAACAACAACAACAATAACAACGGTAACGGTGCGAACAACAATAACAACGGTGACATGTTCTGTCATACAGGGCTCGGACACTATGGTCACCATCCAGATCCTGGGGAAGTCGACCTGCCCCCAGAGACACAACCCACCCCACCGAGCGCAACATTGGTCGGCACTACGATCACACATCTAAGGGATCCAGATCATCATTCCACAGAGATTCAGAATTGTGACAGTGTGAAGATAAAGTTCGAAACGTTGCACACGATGGACTCGTCGGACACGATCGACATCGATAGCCACATGTCGGACCGGGCGAGCGTCAGTTCGAAGAACGCAGCGGACAGTGACAATATGATGATGATCACGCCAGAGCTTCTCGGTTTAATGCCCTCCGGGAGTTCCGTCCACTCGGATTCCGGTGAGAACAACTCGAGAGGACATTCTGGACAATCGAGCTCCCATCACCATGGATCGAAGTCGTGGACACAAGAAGATATGGACGCGGCATTGGAGGCTTTGAGGAACCATGACATGAGCTTGACGAAAGCCTCCGCAACCTTCGGTATACCGTCGACGACGTTATGGCAAAGAGCGCACCGATTAGGCATAGACACGCCAAAAAAGGATGGACCAACAAAGTCGTGGAGCGACGAGAGCCTGAATAACGCTCTCGAAGCGCTAAGAACTGGCACGATCTCCGCCAACAAGGCTTCGAAAGCGTTCGGCATACCTTCGAGCACGTTGTACAAAATAGCGAGGCGGGAGGGTATAAGATTGGCCGCGCCCTTTAACGCAAGTCCTACTACTTGGTCGCCAGCCGATCTCGACCGCGCTTTGGAAGCAATAAGGTCCGGTCAAACATCTGTACAGAGAGCCTCTACAGAATTCGGTATTCCGACGGGCACCTTGTACGGTAGATGTAAAAGGGAAGGAATCGAATTGAGCAGGAGTAATCCCACGCCGTGGAGCGAGGATGCTATGACTGAGGCACTCGAAGCTGTCAGATTGGGTCACATGAGCATCAATCAAGCAGCCATTCACTATAATCTACCTTATTCGTCGCTATACGGTCGGTTCAAGCGAGGGAAATACGAGGAACCTTCAGTCGGCGATCTATCACAAGACGGTAGCAATCCGCATTTCCATCCGAGTCCGAATCAGAATCATTCGTCAGCCGTTCCGGATCAAATGCCCTACCAAGGCAGCTGA
- Protein Sequence
- MLQEDVKKGFLLVTSYLRLPMRMKDVYRTFLVLLQSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFSKLKRRYKRARTTFEPRATDSRHYDRYKEEESNGNYNPENKENHRDWQTEDEDCTEGTTATVVLETCQRTNNNNNNNNNNGNGANNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPSVGDLSQDGSNPHFHPSPNQNHSSAVPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00306165;
- 80% Identity
- -