Basic Information

Insect: Atta colombica
Gene Symbol: -
Assembly: GCA_001594045.1
Location: NW:605003-609517[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.02 1.1 9.1 4.8 1 23 9 32 9 32 0.92

2 15 8.1 4.3e+02 0.9 1.2 1 14 313 326 313 330 0.83

3 15 0.0057 0.3 10.8 1.1 1 23 394 417 394 417 0.94

4 15 0.94 50 3.8 0.2 5 23 424 443 423 443 0.94

5 15 0.25 13 5.7 0.8 2 23 449 470 448 470 0.97

6 15 1.9e-05 0.001 18.6 0.1 1 21 651 671 651 672 0.96

7 15 0.00033 0.017 14.7 0.1 3 23 680 701 678 701 0.92

8 15 0.3 16 5.4 7.0 1 23 711 734 711 734 0.94

9 15 0.2 10 6.0 0.2 2 21 761 780 760 781 0.91

10 15 0.13 7.1 6.5 6.1 1 23 822 845 822 845 0.92

11 15 0.41 22 5.0 1.7 1 19 892 910 892 912 0.93

12 15 0.082 4.4 7.2 6.8 1 23 920 943 920 943 0.96

13 15 0.0017 0.093 12.4 0.6 1 23 1013 1036 1013 1036 0.93

14 15 0.22 12 5.8 0.4 1 23 1309 1332 1309 1332 0.95

15 15 0.0081 0.43 10.3 1.5 2 23 1359 1381 1358 1381 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.02	1.1	9.1	4.8	1	23	9	32	9	32	0.92
2	15	8.1	4.3e+02	0.9	1.2	1	14	313	326	313	330	0.83
3	15	0.0057	0.3	10.8	1.1	1	23	394	417	394	417	0.94
4	15	0.94	50	3.8	0.2	5	23	424	443	423	443	0.94
5	15	0.25	13	5.7	0.8	2	23	449	470	448	470	0.97
6	15	1.9e-05	0.001	18.6	0.1	1	21	651	671	651	672	0.96
7	15	0.00033	0.017	14.7	0.1	3	23	680	701	678	701	0.92
8	15	0.3	16	5.4	7.0	1	23	711	734	711	734	0.94
9	15	0.2	10	6.0	0.2	2	21	761	780	760	781	0.91
10	15	0.13	7.1	6.5	6.1	1	23	822	845	822	845	0.92
11	15	0.41	22	5.0	1.7	1	19	892	910	892	912	0.93
12	15	0.082	4.4	7.2	6.8	1	23	920	943	920	943	0.96
13	15	0.0017	0.093	12.4	0.6	1	23	1013	1036	1013	1036	0.93
14	15	0.22	12	5.8	0.4	1	23	1309	1332	1309	1332	0.95
15	15	0.0081	0.43	10.3	1.5	2	23	1359	1381	1358	1381	0.95

Sequence Information

Coding Sequence: ATGCGTAGTACATACTTATCTTCatacaattgtaatttttgcaGTCGtacttttaagaaaaaattacttttacaatCTCACTTATTTCATGTACATAATGagttaatatgttttaatgacACTGTTAAACGTGAGATTTCCAAATCCaagatctttaaaataaatatatcttctgaagatgatattttaagaattaatgcaaataaaaactCATTATGTTCAAATCTTGTTCAATCAGAAAAGATAAATACTAAGCTTATAAACGTAAATAAATCTCGTACCGATGATGTGATTAATACTGAGAAATCAAAAcctgaaaaattattcaataatgaaGTGTCgtcaattaaagataaaagattacGGCAACCAACATTAACGGAATATCTTGAGCTTTGCAAAAAGAaacgtaatattaaattcagtCCAAGTAAATTGAACATTACAAAAGATGATTTTCCTATGTATGCTTTTTATCATGATAATCAAATAGAAAAACTTCCAGAAGAACAAAATGGACAAATTGATCCTTTATCTACACAATCAGATAATCTTCTTCTAAAACGAACAATACGTTCTATTCAGAAACAAAGTATGAAACATGAAATGCATAAAAAGCCATTTGTAAAACTACATGCAGATGTTGAAATGATGAAGTCTTTTCTAGAAAAACTTTCTGATACGGttgtcgaaaataaaataactgaaGATGGaacaagtaatattatttcatatgatCGTGGAATACCTTATAGTTTACGATCTTTAAATGGAATCTCTTCCGGGGAAGCAAGTTCAAATTTAGGAATGAGGGAAAACAAAAGTGTATCTAAGAAATCTCGATTTGGtacagaatttaatattaaaaataaaggaaatagGATTGATTTAGAAAAGATAACTTCTAAAGTGgattggaaaattattatgactcattttaaatgcaaggaatgtacaatttttttaacaagatgTGATGAACAACTAAGAAATTCTTATCAAATTTCTGCTTTTAAAGCCAAGAAAAACACTTGTCTTACTTCTGGATTTCAAGAAAGTGATGTACGAAATAAAGTAAAACTAAAAGACGTAGAGGTTTCTTTGGAACGTTTAACAATTGTTCCAActgtacatataaaagaaaaaacaccAGATGTCGAGAAAcacaataacaattattttttgtgtaaagTTTGTAAGGAGagtttttcttcaaaattggCCAAacgtatacatattaaatcatCTCATATAGCATATATGTCAAGCATATGTGGTGCACGTTATaagttgaaatttaaattacttcaGCATTATCTACGCGAACACGTTTCTAAACAAAATCAATGTTGTATTTGTTATATGCTATTATCTGATTATGAAGCGTTGAAGCAACACTTAAATGTTCATTGTCTGAAATATATTCAACGACAGGACGAccaatatttaatagatactGAATTAGAATGCAACTTGACCAAAAAATCTAAGTATCTTCGTGACGAGACATTCTTGTCACGAATATCTTTGAAAGAACATCAAAGTCATtgtacagtaaaaaaaaaagaaatagaagaagatCAGAAAGATTCCATGgaagaaacaaatttatcCCCGAAAGATATTCCCGAAGTACAGCACGAGAAGACCGATAATATAGTTGACATAACATgtaacgaaaaaattaatctggatgatttatgtaattcattaaatagtgatagtataaaaaaatcgaatgaaCATCAAATATCacttcataataaaaaagaacaagaaattaataaagctAATCAAAACATTcttgttaataataacttaattaagGAGGAAATAGGAACTATTAACGAATCGCAACACTCTAAAAAgcttttggaaaataattctaCAATTAGTAATCAAGATATCGCGAATACACAATTGAATAACATTGCAACAAAGAATGGAACTTATCCCTGCGATATATGTGGAAAGCAATTTCAAACTCCCAAGAATTTGGAGATGCATGTACGCAATTTTAGTTTTACCTCCGATATTTGTCCATTGTGTGGCACTGGATTTAGTTCTAAACGTTTTTTACAGTCACATATCACTGCAGCGCATGTACCacatatttcaaaaacttacaattttcattgtgTATTCTGTAACCaaggtttttttaaaaaacacgaTCTTCGGTctcatatattacatttacatgGTCAACAAGTACTCAATACGCTCACATGCAATCCTAATAATCAAGAGAAATCTAATGAATCAGTTACCCATAGCACAGTATGTAATGTTTGTAATTTGGTATTTGAAACTCATGATCGCTATGTTGAGCATCGAAtgtactattataaaaatcatacattTATATGCTCACTTTGTGAACAAAACTTTCAAGGAATGTACATGTTTCATCATCATAACAAACTTACACATTGTCCAGAAGATAAACGCAAGTCATATAATTACATCTGCGAGGTATGTCATGAGGGATTCAATCATGAGTCACATTTTTATTCGCATAATATGCATGTGCATTCGAATGAAGTGAATTTAGGTGAGATTGCAAAAGAATCTGAAGATACCAAGAATAGAAGTCGGAATTCATCTAACGTCCAGAAACAGATTAGAAATTGTTCTACGAatcaagaaaaacaaaatgaacaaTCAAATGAGTATACTTGTCAAATTTGTCAGATGAAATGTAGAAATATGAATCATATGATAATGcacaaagaattttattccaaTGATGGCGATTTTAAATGTGACAAGTGTAATAGACAATGCAAAACATTTGATTTTCTTAATCAACATAAGAAATTAACTCATTCTTGTCGGGATGTTTATAATGGACATATGTGTTACATTTGTGGCGAAGTCCTGGAAACAGGTATTTTATTGGAATGTCACGAAAAACACTTccattcaaatattatcagcAATAATATGGATAATTGGAAGAATTGTAATCAGCTATCatcttcaaatataatatatctaagtaaatctaaaaacaatatatgtaatgtaactGAATATAAATGCTTATTTTGTGATATGAAGTTCTCTACTCCTAACACTGTCCAAACACATATTGTTTATGTTCATATGGATGATATGATAGCTGAACGAGCTACTTTAAAACTTGCTCTTCCCATTACTAATAACAATAGCATTCaaaaacaatttgaaattgGTCAAATACCATCAACATCGTCAttgtcatcatcatcatcatcatcatcatcatcatcatcatcatcattatcatcatcatcatcatcatcatcatctgAAAGTAAATTAGCTGAACTTCTTCAAAGATCGACAATTCAACAATCTAGTAACATTGAAAATAGTATAGTTAAAAATGGAATGAACAATAAAACTGTTGAACTGTTTAAGAACTTCAGAACTATGTAtccaaaaaatacaattacggAGAAGACTTCAAATCcatgtattaataaatctaaagaCAATATTTCAACgtgtaatattattgcattaaataCGAAATCAAAAGATATTCCAGTTTCTTCATCCGTTACAACTTCTAGGATTGTTGCATCAAATACTGAAGTTGGAAACAATGCTTCAGTTTTTTTATCCACTGGATCgatatttaaaactatatcCAATACTGAAtccaaaaataacatttcaatttctttactTGGATCAACCAACAATCTCCGAAAAGGTTATGAAATTCCTTTAAAATCTGGTTCGaccaataaatttaaaactaactCATTAGCTAAggaatctataataattaataaatccaaAACAGTACCTGCATATCTTTTACCAACTAGACCTCTATCAACATTCAAACGTATTATGCCAAAATCTTGGAAAAGCAATGAAATTACAAATCagaaatctgaatcagtgaacACTTATGCTATTGGTCATGGTTATTCATGCCCATTATGTCCTTTAGAATACCCATCCTTGCTGTTCTTCCATGCACATCTCAAATATGCTCATGCAGATTCTATCGTTTCCATTCGAACTAATGAATTGACTGTCCCACAGGTGAATAAATCTCAGAAAGCCTTTATGATAGAATGTTTATTGTGTCCATGTACCTTCCCTGATGAAACCAAGTATAAGAAGCATTTGAGAAACTCTCATACATATTATGTGTATATCCCAAACTCTCaagaaatgacaaaaattaataacgtgCGTAATTCTTTAACACAGATAAACGTTAACAGAAAAAGCACAGTTCCTGAAACAATTACTAttgatgatgatgatgataacgTCAAGAATACATCAGATCAAGGAGCAGCTGAAGTTACAGCGCTCAATTCCAAAGAACAGAATGAGAAAATTGGTAAATTAAGAGTGAAACCTCTTgcaaaaatcattgaaaatttatctatgGATTCTGCATCGAAACTTTTATAG
Protein Sequence: MRSTYLSSYNCNFCSRTFKKKLLLQSHLFHVHNELICFNDTVKREISKSKIFKINISSEDDILRINANKNSLCSNLVQSEKINTKLINVNKSRTDDVINTEKSKPEKLFNNEVSSIKDKRLRQPTLTEYLELCKKKRNIKFSPSKLNITKDDFPMYAFYHDNQIEKLPEEQNGQIDPLSTQSDNLLLKRTIRSIQKQSMKHEMHKKPFVKLHADVEMMKSFLEKLSDTVVENKITEDGTSNIISYDRGIPYSLRSLNGISSGEASSNLGMRENKSVSKKSRFGTEFNIKNKGNRIDLEKITSKVDWKIIMTHFKCKECTIFLTRCDEQLRNSYQISAFKAKKNTCLTSGFQESDVRNKVKLKDVEVSLERLTIVPTVHIKEKTPDVEKHNNNYFLCKVCKESFSSKLAKRIHIKSSHIAYMSSICGARYKLKFKLLQHYLREHVSKQNQCCICYMLLSDYEALKQHLNVHCLKYIQRQDDQYLIDTELECNLTKKSKYLRDETFLSRISLKEHQSHCTVKKKEIEEDQKDSMEETNLSPKDIPEVQHEKTDNIVDITCNEKINLDDLCNSLNSDSIKKSNEHQISLHNKKEQEINKANQNILVNNNLIKEEIGTINESQHSKKLLENNSTISNQDIANTQLNNIATKNGTYPCDICGKQFQTPKNLEMHVRNFSFTSDICPLCGTGFSSKRFLQSHITAAHVPHISKTYNFHCVFCNQGFFKKHDLRSHILHLHGQQVLNTLTCNPNNQEKSNESVTHSTVCNVCNLVFETHDRYVEHRMYYYKNHTFICSLCEQNFQGMYMFHHHNKLTHCPEDKRKSYNYICEVCHEGFNHESHFYSHNMHVHSNEVNLGEIAKESEDTKNRSRNSSNVQKQIRNCSTNQEKQNEQSNEYTCQICQMKCRNMNHMIMHKEFYSNDGDFKCDKCNRQCKTFDFLNQHKKLTHSCRDVYNGHMCYICGEVLETGILLECHEKHFHSNIISNNMDNWKNCNQLSSSNIIYLSKSKNNICNVTEYKCLFCDMKFSTPNTVQTHIVYVHMDDMIAERATLKLALPITNNNSIQKQFEIGQIPSTSSLSSSSSSSSSSSSSSLSSSSSSSSSESKLAELLQRSTIQQSSNIENSIVKNGMNNKTVELFKNFRTMYPKNTITEKTSNPCINKSKDNISTCNIIALNTKSKDIPVSSSVTTSRIVASNTEVGNNASVFLSTGSIFKTISNTESKNNISISLLGSTNNLRKGYEIPLKSGSTNKFKTNSLAKESIIINKSKTVPAYLLPTRPLSTFKRIMPKSWKSNEITNQKSESVNTYAIGHGYSCPLCPLEYPSLLFFHAHLKYAHADSIVSIRTNELTVPQVNKSQKAFMIECLLCPCTFPDETKYKKHLRNSHTYYVYIPNSQEMTKINNVRNSLTQINVNRKSTVPETITIDDDDDNVKNTSDQGAAEVTALNSKEQNEKIGKLRVKPLAKIIENLSMDSASKLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01477929;
90% Identity: iTF_00015709;
80% Identity: -