Basic Information

Insect: Atta colombica
Gene Symbol: ZNF236
Assembly: GCA_001594045.1
Location: NW:4876264-4893005[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.00018 0.0096 15.5 0.7 2 23 182 203 181 203 0.96

2 26 0.00011 0.0059 16.2 0.6 1 23 209 231 209 231 0.98

3 26 2.7e-05 0.0014 18.1 0.3 2 23 237 258 237 258 0.97

4 26 0.0064 0.34 10.7 0.2 3 23 266 286 264 286 0.96

5 26 0.00013 0.0071 16.0 0.6 2 23 297 318 297 318 0.98

6 26 7e-07 3.7e-05 23.1 0.9 1 23 337 359 337 359 0.99

7 26 3.1e-05 0.0017 17.9 0.2 1 19 365 383 365 384 0.97

8 26 5.2e-05 0.0028 17.2 0.8 1 23 393 416 393 416 0.94

9 26 0.00029 0.016 14.9 1.8 1 23 425 448 425 448 0.97

10 26 8.3e-07 4.4e-05 22.9 0.3 1 23 570 592 570 592 0.98

11 26 0.059 3.1 7.6 3.6 1 23 626 648 626 648 0.97

12 26 9.9e-05 0.0053 16.4 2.7 1 23 652 674 652 674 0.98

13 26 0.0063 0.34 10.7 6.0 1 23 729 751 729 751 0.97

14 26 3e-05 0.0016 18.0 4.9 1 23 757 779 757 779 0.99

15 26 4.7e-06 0.00025 20.5 1.7 1 23 785 807 785 807 0.98

16 26 0.00042 0.022 14.4 8.7 1 23 813 835 813 835 0.98

17 26 1.4 74 3.3 1.3 2 23 1183 1204 1182 1204 0.87

18 26 0.00015 0.008 15.8 3.7 1 23 1210 1232 1210 1232 0.99

19 26 0.23 12 5.7 0.7 2 23 1239 1260 1238 1260 0.96

20 26 2.7e-08 1.4e-06 27.6 1.4 2 23 1334 1355 1333 1355 0.98

21 26 8.5e-05 0.0045 16.6 5.0 1 23 1361 1383 1361 1383 0.99

22 26 0.0025 0.13 11.9 3.9 1 23 1389 1411 1389 1411 0.97

23 26 0.00032 0.017 14.7 3.1 1 23 1417 1439 1417 1439 0.99

24 26 3e-06 0.00016 21.1 0.6 2 23 1674 1695 1673 1695 0.97

25 26 0.00012 0.0065 16.1 6.0 1 23 1701 1723 1701 1723 0.98

26 26 0.0004 0.021 14.5 7.8 1 23 1729 1752 1729 1752 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.00018	0.0096	15.5	0.7	2	23	182	203	181	203	0.96
2	26	0.00011	0.0059	16.2	0.6	1	23	209	231	209	231	0.98
3	26	2.7e-05	0.0014	18.1	0.3	2	23	237	258	237	258	0.97
4	26	0.0064	0.34	10.7	0.2	3	23	266	286	264	286	0.96
5	26	0.00013	0.0071	16.0	0.6	2	23	297	318	297	318	0.98
6	26	7e-07	3.7e-05	23.1	0.9	1	23	337	359	337	359	0.99
7	26	3.1e-05	0.0017	17.9	0.2	1	19	365	383	365	384	0.97
8	26	5.2e-05	0.0028	17.2	0.8	1	23	393	416	393	416	0.94
9	26	0.00029	0.016	14.9	1.8	1	23	425	448	425	448	0.97
10	26	8.3e-07	4.4e-05	22.9	0.3	1	23	570	592	570	592	0.98
11	26	0.059	3.1	7.6	3.6	1	23	626	648	626	648	0.97
12	26	9.9e-05	0.0053	16.4	2.7	1	23	652	674	652	674	0.98
13	26	0.0063	0.34	10.7	6.0	1	23	729	751	729	751	0.97
14	26	3e-05	0.0016	18.0	4.9	1	23	757	779	757	779	0.99
15	26	4.7e-06	0.00025	20.5	1.7	1	23	785	807	785	807	0.98
16	26	0.00042	0.022	14.4	8.7	1	23	813	835	813	835	0.98
17	26	1.4	74	3.3	1.3	2	23	1183	1204	1182	1204	0.87
18	26	0.00015	0.008	15.8	3.7	1	23	1210	1232	1210	1232	0.99
19	26	0.23	12	5.7	0.7	2	23	1239	1260	1238	1260	0.96
20	26	2.7e-08	1.4e-06	27.6	1.4	2	23	1334	1355	1333	1355	0.98
21	26	8.5e-05	0.0045	16.6	5.0	1	23	1361	1383	1361	1383	0.99
22	26	0.0025	0.13	11.9	3.9	1	23	1389	1411	1389	1411	0.97
23	26	0.00032	0.017	14.7	3.1	1	23	1417	1439	1417	1439	0.99
24	26	3e-06	0.00016	21.1	0.6	2	23	1674	1695	1673	1695	0.97
25	26	0.00012	0.0065	16.1	6.0	1	23	1701	1723	1701	1723	0.98
26	26	0.0004	0.021	14.5	7.8	1	23	1729	1752	1729	1752	0.98

Sequence Information

Coding Sequence: ATGTTGACGGAACAGAATGTGATTATGGAACTAACTGGTTCTAATGATACAGTGATTGGTTTTATCACTACCGATGATGGTCATGCGCTACTGATAGTAGATGAACGTGAGGACGGTACATTGGAATTTGTGACAACGCCACCAATCACATTTATGCCACAGAATAACATAGTATCTCCAACACTGATTAAAATGGAGgatggaaattttattttacattcgCCTATTTTCCAAATGAATATGCAGGGTCTGTCGGGAACTGCGATGCAACAAACAAATCTACTGCCACGGATGCAATATTTAGAATCTAGATCTACAATTACGGAACAATTAAAAGTACAAGATAATGAATGTGCAGTTACAGAATATCTATTACCTATTAAAGATAATAGCAGTATGTTATCAGACAAAGGacaattaacaattaacaatCATGCTAAAAGCAAATCTACGCCTGCATTTAATACTATACAAAACGTCTACAAAAGATCTCCAGGGAGACCAAAGAAGAACGAAGTAAATCCGCAAaatACGCAGTTTTTGCAATGTGATATATGCAGTCAAGAATTTACTAAACAAGCATTATACCGTAAACATATGGAAAATCATGCCGAAGAAAAACCGCATAGATGTCCTAAATGTCCAGCATCATTTAATATTCCaACAAATTTCACGCTTCATATGGCAACGCATAATACCGGTGACCCAAAATGCCCCGAATGCGGTAGGAAATATGCCAGAATGGCGAGTCTTAAGTCTCACATGTTGCTGCATGAAAAGGAGGAAAATCTCTTTTGCACGGAGTGTGAAGATGCCTTTTCGACGAAGGCTCAATTGGATGCGCATTTAAAACTTCACGGAGAAAAGTGGGCGAGCGAGGATGTACGGAAATGCAAATTATGCAACAAACAATTCGTGCAGCCCGCACTCTACCGAATGCACATTCGCGAGCATTACAGGACGAAGATAATAAAGCAAACTAAGAGGGGAACGAAGCATAAAACAATGTACAAATGTACCATATGTTTGAAGACTTTTCAAAAACCGAGCCAATTAATACGACATATCAGAATACATACCGGAGAAAAGCCCTTTGAGTGTACCGTTTGCAACAGGGCATTTACGCAAAAGAGTTCGCTACAAATCCATGCATGGCAACACAAGGGCATTCGGCCACATGCCTGCAATCTCTGTAACGCCAAGTTTAGTCAAAAAGgaAATCTAAAGGCACATGTACTCAGAGTGCACAATGCACCAGAAGGTGAATCAACGTATGCGTGTTCCTATTGTTCCTGCGTCTTTAAGAGGCTGGGTAGTTTAAATGGACACATAAAACGAATGCATTCTGTTACCTCGGAGGAATTCAGTGCAAAATCCTCGGAAGCTAATCCTATCTCGTCGGAAGCTGAAATGCGCGCGACCGTCGACAGTGTTATATCACAATTGGCATCTTTGGAATCCGTTGTGAATAATACTGCAGATTCTACAAGAACTACGACCTTAAGTGCGgaacaaaatgatattttgcaaCAGGCATTAAAAAACAGCGGTTTACCGAACAAAAACGATGTCGTTTCGAaagAAACCGCAGAACCAAAGAAGACTGATTCATCAACGTCATATGTTACACTAGTAGACAGAACTGCTGGTGGTACTTCgagGAAGTATCTCACTATAAAACAACGCTGCGTGGGAAATGTACGGTGGTATGCGTGTTCATTTTGTCCAAAAGAATTCAAAAAGCCATCGGATCTGATACGTCATTTGCGCGTACATACCCAAGAGAAACCTTTCAAaNNNNNNNNNNNNNNNNNNNNNNNNGCGCTAAAATCGACAATGATAGCGCATGAGCGGACTCATACTGGAGTAAAGAAATACGCCTGCGAGTCCTGCGACAAAACCTTTGCGTGTCATAACAGTCTTACCGCTCACACAAaaTTACACACGAAACCGCACAAGTGCAATATATGCGATAAATCATTTAGCGCAAGCACCATCCTAAAAAATCACATGAAGAGCCACACGCGGGAGAAGCCCAAAATATCGCCGGAGGCGGAAAGTTTGGTGCCGCAAGTGGTACTGCAAGAACCACTTGTCATTAGCGACGCTGGTAATAAAATCAGCGTGGCACAGGTGCAGTCAAAACAGAAACAATTATACGAAAATGTCGGCGTAACCAGGCCGCATGAATGTTGGGTTTGTCATGCAGCGTTCAGGAAAGTTAGTCACTTGAAGCAACATTTTCGCAGGCATACGGGTGAACGTCCTTACAAGTGTTCCAAGTGCGACAGGAGATTCACATCAAACAGTGTTCTGAAATCTCATTTACATACGCACGACGATACGAGGCCTTACAGTTGTTCTGTATGCGACACGAAATTCTCTACGCAGAGCAGCATGAAGAGACATTTGGTGACACATAGCAATAAAAGGCCATACATGTGTCCATACTGTCACAAAACGTTTAAGACATATGTCAATTGCCGAAAGCACATGAAGAGGCACAAACACGAGTTAGCACAACGGCAATTGGAAGAACAAAAGATGCAAGCTCAAAAGGATTCACAGCCTTCGAACGAAGCTAAGGAAGCTACATCATCATTACCGGAGAGCATCACTCTCACCGAAGATATGTCCTTTCAACCGCAAATGGCACCAGATTTTACGCAAGCTTTCTCTGATCAGTTTCAAAATATCAACacggagaaagaaaaatcctTTTTACTACCAGACAATACAACGCCATCGATAGTGAATCaaaatttatctGTTGACACTAATTTAGGAACGTCGCAAACTTTACACGCTGATGAAACTGGTACTATCACGTTACCTAATTACTCAGGAGATCAAACTTTCACGCCGGAAAGTATACGAGAAATAGAGGAGACTCTAAATCAGCAGTTATTCAACATGGGCATGAATCTCGAACTGGGAACAAACAATTTGCCGAGGCAGATAGACGAAGCAAACACAAATTCTAGAGAACAGCCGGtgctcaatattatatatgaacataACAAATCTCTGGAATCGTCAGGCAATACCATATTCATGTCGCAATTTGATTCATTTGATATGAACCAAATAACATTGCAGaCGGATAACGATATAGACATTGGTTTAAATCCGAGCAATTCTATGAGTATGTCCAGTATTTTGCCCAGATCCGTGGGAAGTCAACAAGAGAAACAACAAGCTATTCCAGTTACTACAGCTAGCAATATAGACACTTCTCAAATTACGAGAAATACTCATCTGGTGGTAATAAATCCTAAGGAAAATTGTTCGGAATTAATGAGACTTTCGCAAGTATGCCCATCGAAATACCCAAAAGTCATCGCGAAAGCAGATACCACAAATGGATCAGAGATGCAAGGCATGAATGGGCATGAAAAGgcatcacaaaaaaataatactaagtcgtgtgaaaatgaaagaaattcttttatgaaaaattttcaaagtacAATGCCTTCGAAAACGCTTGCTTCATCTGGCATAACGGATAACTCAGCCAAAATATCGCAGTGTAACACACTGTTGCAATGTCATGTGTGTGGTGATCAAGGTTTCACGACAGAGAGATTGAagGAACATTTGAAATCTCATCGCGGTGACAAAGAGTATGAATGTTCCGAGTGTTCCCAGCGATTCTGCACGAATCGCGGTCTCAGTAAACATCTGAAGATGCACATGAACAAGCAgcGATGGAAATGCATGATATGTCAGAAAGTACTGGACAGCAAACTGCAAATGAAATATCACAGCAAAATACACACCGCAACTTGGAATGTTTCGTCCATGGAGCCAGACAGCTCTCAAAAGAATATTTCCTCGAGTTCCGGTTTACCATCCGATCTAACAACGCTGGATGTTCGAGCAGATTCAAACTCGTCAGTTTCCGAGAAAGTTTTGATGGCCGCAGTCGCCGAGAAAAAAAGCATGGATCACGCTGATGAAAATATAGTGAAGAAAGAGATAAGGGAATACACTAATAAATGCAAGTATTGTCCGAAAACTTTCCGTAAACCAAGCGATCTCATCAGGCACATTCGCACGCATACGGGTGAACGACCTTACAAGTGTGATCACTGCAACAAAAGCTTCGCGGTCAAGTGTACTTTGGACTCACACATGAAGGTTCACACGGGCAAGAAGACATTTTGCTGCCACGTTTGCAGTAGCTTGTTCGCTACAAAGGGCAGTTTGAAGGTTCACATGCGATTGCATACAGGTTCGAAACCATATAAATGTCTTGTGTGCGATCTTCGCTTTCGTACTTCGGGTCACAAGAAGGTACATATGTTGAAACACGCAAGAGAGCATAAGGGTGGCGCAAAACGCAAGCCGAAAAACTCCAAGGTCGCTGCAGTGGCAGAAGCGGCGGCCAGCCTTGAAAAACTCGGCAATAGTTCTCTTGATAATGCGTCAACAACGATGACTACTACCATAATCAGCGATGAAGCCGCGCCGTCGCAGAATCTGAATTATCCCACTTTAGAGCAAACAGTAAATCTCGGTACCGCGGTTCATCTGCCGAATCAAATCGCGTTTAATCATACCGACACTACGACAATCCTCAATAACAATTCCATACTTTCTGTGAACGAAAACAACGAACTAGTCGCGAATCTGCAGTTCTTGTTGGCAAATGGTCTCGTAACTTTTCAAACGGACGATACTCTGCTGACGCAATCAACGACAAATAGTTCCGATGCTACCGGCGCCGGAATCCCAACTAACATGATCGAGTTAGTTAATCCGGATCCTTTTCAGGAAGCTTGCAACTTGGGTAACACTAATCACGTAGTGATAACCAGTCAGGTATCAGCGGAGACAACAACTGCGGATACGAACAACACGGCAGTTATTCAGATGAACAATTGTATGCCTCCTGTGCCTATGGTACAAATTCAGACTCGAGATACAAATAGCGTCGGTATGTTTGAAGCGAAAACGAGTAATCAAACGACGACAGTAACTATGGCGAAAGCTTCGGCGCAGCCTTCAAGCAAGGAGTGCGACGTATGCGGAAAAACGTTCATGAAGCCGTATCAACTGGAACGACACAAACGCATTCATACAGGCGAAAAACCGTTCAAGTGCGAACAGTGCGGCAAGTCGTTTGCGCAAAAATTTACGCTGCATCTACATCAGCAGCACCACACCGGTGATCGGCCGTACTCTTGTCCGCACTGCAAGCGCCTTTTCACACAGAAATGCAACTTACAGACACATCTGAAACGCTTCCATCAGACGGTCATGCTCGATGTTAAAAAGCTGAAGAGTGGCCAGCAGATGCTGGGTACACTTCTACAAGACAATCAAGGCGGCACTACCAAGCTGCTAAATCTAGACGACATACTGGTAGTAgattttctcaaataa
Protein Sequence: MLTEQNVIMELTGSNDTVIGFITTDDGHALLIVDEREDGTLEFVTTPPITFMPQNNIVSPTLIKMEDGNFILHSPIFQMNMQGLSGTAMQQTNLLPRMQYLESRSTITEQLKVQDNECAVTEYLLPIKDNSSMLSDKGQLTINNHAKSKSTPAFNTIQNVYKRSPGRPKKNEVNPQNTQFLQCDICSQEFTKQALYRKHMENHAEEKPHRCPKCPASFNIPTNFTLHMATHNTGDPKCPECGRKYARMASLKSHMLLHEKEENLFCTECEDAFSTKAQLDAHLKLHGEKWASEDVRKCKLCNKQFVQPALYRMHIREHYRTKIIKQTKRGTKHKTMYKCTICLKTFQKPSQLIRHIRIHTGEKPFECTVCNRAFTQKSSLQIHAWQHKGIRPHACNLCNAKFSQKGNLKAHVLRVHNAPEGESTYACSYCSCVFKRLGSLNGHIKRMHSVTSEEFSAKSSEANPISSEAEMRATVDSVISQLASLESVVNNTADSTRTTTLSAEQNDILQQALKNSGLPNKNDVVSKETAEPKKTDSSTSYVTLVDRTAGGTSRKYLTIKQRCVGNVRWYACSFCPKEFKKPSDLIRHLRVHTQEKPFKXXXXXXXXALKSTMIAHERTHTGVKKYACESCDKTFACHNSLTAHTKLHTKPHKCNICDKSFSASTILKNHMKSHTREKPKISPEAESLVPQVVLQEPLVISDAGNKISVAQVQSKQKQLYENVGVTRPHECWVCHAAFRKVSHLKQHFRRHTGERPYKCSKCDRRFTSNSVLKSHLHTHDDTRPYSCSVCDTKFSTQSSMKRHLVTHSNKRPYMCPYCHKTFKTYVNCRKHMKRHKHELAQRQLEEQKMQAQKDSQPSNEAKEATSSLPESITLTEDMSFQPQMAPDFTQAFSDQFQNINTEKEKSFLLPDNTTPSIVNQNLSVDTNLGTSQTLHADETGTITLPNYSGDQTFTPESIREIEETLNQQLFNMGMNLELGTNNLPRQIDEANTNSREQPVLNIIYEHNKSLESSGNTIFMSQFDSFDMNQITLQTDNDIDIGLNPSNSMSMSSILPRSVGSQQEKQQAIPVTTASNIDTSQITRNTHLVVINPKENCSELMRLSQVCPSKYPKVIAKADTTNGSEMQGMNGHEKASQKNNTKSCENERNSFMKNFQSTMPSKTLASSGITDNSAKISQCNTLLQCHVCGDQGFTTERLKEHLKSHRGDKEYECSECSQRFCTNRGLSKHLKMHMNKQRWKCMICQKVLDSKLQMKYHSKIHTATWNVSSMEPDSSQKNISSSSGLPSDLTTLDVRADSNSSVSEKVLMAAVAEKKSMDHADENIVKKEIREYTNKCKYCPKTFRKPSDLIRHIRTHTGERPYKCDHCNKSFAVKCTLDSHMKVHTGKKTFCCHVCSSLFATKGSLKVHMRLHTGSKPYKCLVCDLRFRTSGHKKVHMLKHAREHKGGAKRKPKNSKVAAVAEAAASLEKLGNSSLDNASTTMTTTIISDEAAPSQNLNYPTLEQTVNLGTAVHLPNQIAFNHTDTTTILNNNSILSVNENNELVANLQFLLANGLVTFQTDDTLLTQSTTNSSDATGAGIPTNMIELVNPDPFQEACNLGNTNHVVITSQVSAETTTADTNNTAVIQMNNCMPPVPMVQIQTRDTNSVGMFEAKTSNQTTTVTMAKASAQPSSKECDVCGKTFMKPYQLERHKRIHTGEKPFKCEQCGKSFAQKFTLHLHQQHHTGDRPYSCPHCKRLFTQKCNLQTHLKRFHQTVMLDVKKLKSGQQMLGTLLQDNQGGTTKLLNLDDILVVDFLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01523538;
90% Identity: iTF_01477787;
80% Identity: -