Basic Information

Insect: Atta cephalotes
Gene Symbol: -
Assembly: GCA_000143395.2
Location: NW:528120-550874[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.8 1.1e+02 2.8 3.4 1 20 173 192 173 194 0.89

2 16 2.7 1.6e+02 2.3 0.3 2 17 202 217 201 218 0.87

3 16 0.0087 0.5 10.1 4.8 1 23 235 258 235 258 0.92

4 16 0.0063 0.36 10.6 1.1 1 23 620 643 620 643 0.94

5 16 1 60 3.6 0.2 5 23 650 669 649 669 0.94

6 16 0.27 16 5.4 0.8 2 23 675 696 674 696 0.97

7 16 2.1e-05 0.0012 18.4 0.1 1 21 876 896 876 897 0.96

8 16 0.00036 0.021 14.5 0.1 3 23 905 926 903 926 0.92

9 16 0.33 19 5.2 7.0 1 23 936 959 936 959 0.94

10 16 0.22 12 5.8 0.2 2 21 986 1005 985 1006 0.91

11 16 0.15 8.5 6.3 6.1 1 23 1047 1070 1047 1070 0.92

12 16 0.45 26 4.8 1.7 1 19 1117 1135 1117 1137 0.93

13 16 0.091 5.2 6.9 6.8 1 23 1145 1168 1145 1168 0.96

14 16 0.0019 0.11 12.2 0.6 1 23 1238 1261 1238 1261 0.93

15 16 0.25 14 5.6 0.4 1 23 1536 1559 1536 1559 0.95

16 16 0.009 0.52 10.1 1.5 2 23 1586 1608 1585 1608 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.8	1.1e+02	2.8	3.4	1	20	173	192	173	194	0.89
2	16	2.7	1.6e+02	2.3	0.3	2	17	202	217	201	218	0.87
3	16	0.0087	0.5	10.1	4.8	1	23	235	258	235	258	0.92
4	16	0.0063	0.36	10.6	1.1	1	23	620	643	620	643	0.94
5	16	1	60	3.6	0.2	5	23	650	669	649	669	0.94
6	16	0.27	16	5.4	0.8	2	23	675	696	674	696	0.97
7	16	2.1e-05	0.0012	18.4	0.1	1	21	876	896	876	897	0.96
8	16	0.00036	0.021	14.5	0.1	3	23	905	926	903	926	0.92
9	16	0.33	19	5.2	7.0	1	23	936	959	936	959	0.94
10	16	0.22	12	5.8	0.2	2	21	986	1005	985	1006	0.91
11	16	0.15	8.5	6.3	6.1	1	23	1047	1070	1047	1070	0.92
12	16	0.45	26	4.8	1.7	1	19	1117	1135	1117	1137	0.93
13	16	0.091	5.2	6.9	6.8	1	23	1145	1168	1145	1168	0.96
14	16	0.0019	0.11	12.2	0.6	1	23	1238	1261	1238	1261	0.93
15	16	0.25	14	5.6	0.4	1	23	1536	1559	1536	1559	0.95
16	16	0.009	0.52	10.1	1.5	2	23	1586	1608	1585	1608	0.95

Sequence Information

Coding Sequence: ATGGCTCGAGTTCAACCATATGAAAGAGTTGTGAACGCCGTAATCATACATACAAATCCAACACTTGGTATAGAAATCCAAAATGGGACGAAGATTAAGCAAGAGCCTATTGATACATCATCGCATACTGATACAACTGAATATGATACTCctatagttaaaaattattatagtttaattgATCATGATCATCATTATTGCGACAAATCATTATCTAATAAGTCATGTAAAAGCATAAATAACACAGAAAACAGACATTCGAATGGTCATAATGCATATTCAAATGACGTAactaatattgttaatacagatcgtaaaaatgtaaaaacaaagaaagaaatagataatACTTTACCACGTTTTAAGAAACGGAAATATTCCAATGAAATctttagtaataaaaacaCTAATGCATTATGTTCAGTAACTAAAAATGttaagagaaaaaggaaacaaaaaagcattatattagattataaaaaaaaaatacaatgtaagaataaattaaaaaagggaTTTACATGTGATAtatgttttagaaaattcaGTTGTCTTTCATATTGGAAAATCcataaacaatattacaaacttgataaaagtaataagtgcagggtttgtaataaatatttcatagctAACGACAAATTACAGTCTGATACGTGTCATTGCGTACATAGCATGCGTAGTACATACTTATCTTCatacaattgtaatttttgcaatcgtacttttaagaaaaaattacttttacaatCTCACTTATTTCATGTACATAATGagttaatatgttttaatgacACTGTTAAACGTGAGATTTCCAAATCCAAGatctttaaagtaaatatatcttctgaagatgatattttaagaattaatgtaaataaaaactcaTTATATTCAAATCTTGTTCAATCAGAAAAGATAAATACTAAGCTTATAAACGTAAATAAATCTCGTACCGATGATGTGATTAATACTGAGAAATCAAAACccgaaaaattattcaataatgaaGTGTCgtcaattaaagataaaagattacGGCAACCAACATTAACGGAATATCTTGAGCTTTGCAAAAAGAaacgtaatattaaattcagtCCAAGTAAATTGAACATTACAAAAGATGATTTTCCTATGTATGCTTTTTATCATGATAATCAAATAGAAAAACTTCCAGAAGAACAAAATGGACAAATTGATCCTTTATCTACACAATCAGATAATCTTCTTCTAAAACGAACAATACGTTCTATTCAGAAACAAAGTATGAAACATGAAATGCATAAAAAGCCATTTGTAAAACTACATGCAGATGTTGAAATGATGAAGTCTTTTCTAGAAAAACTTTCTGATACGGttgtcgaaaataaaataaccgAAGATGGaacaagtaatattatttcatatgatCGTGGAATACCTTATAGTTTACGATCTTTAAATGGAGTCTCTTCCGGGGAAGCAAGTTCAAATTTAGGAATGAGAGAGAACAAAAGTGTATCTAAGAAATCTCGATTTGGtacagaatttaatattaaaaataaaagaaataggaTTGATTTAGAAAAGATAACTTCTAAAGTGgattggaaaattattatgactcattttaaatgcaaggagtgtacaatttttttaacaagatgTGATAAACAACTAAGAAATTCTTATCAAATTTCTGCTTTTAAAGCCAAGAAAAACACTTGTCTTACTTCTGGATTTCAAGAAAGTGATGTAcgaaataaagtaaaactaAAAGACGTAGAGGTTTCTTTGGAACGTTTAACAATTGTTCCAActgtacatataaaagaaaaaacaccAGATGTCGAGAAAcacaataacaattattttttgtgtaaagTTTGTAAGGAgagtttttcttcaaaattggCCAAACGTATACATATTAAGTCATCTCATATAGCATATATGTCAAGCATATGTGGTGCACGTTATaagttgaaatttaaattacttcaGCATTATCTACGCGAACACGTTTCTAAACAAAATCAATGTTGTATTTGTTATATGCTATTATCTGATTATGAAGCGTTGAAGCAACACTTAAATGTTCATTGTCTGAAATATATTCAACGACAGGACGAccaatatttaatagatactGAATTAGAATGCAACTTGACCAAAAAATCTAAGTATCTTCGTGACGAGACATTCTTGTCACGAATATCTTTGAAAGAACATCAAAGTCATTGTACAgtacaaaaagaaatagaagaagatCAGAAAGATTCCATGgaagaaacaaatttatcCCCGAAAGATATTCCCGAAGTACAGCACGAGAAGACCGATAATATAGTTGACATAACATgtaacgaaaaaattaatctggATGATTTATGTAATCCATTAAATAGTGATagtgtaaaaaaatcgaatgaaCATCAAATATCacttcataataaaaaagaacaagaaattaataaagctaATCAAAACATTcttgttaataataacttaattaagGAGGAAATAGGAACTATTAACGAATCGCAACACTCTAAAAAgcttttggaaaataattctaCAATTAGTAATCAAGATATCGCGAATACACAATTGAATAACATTGCAACAAAGAATGGAACTTATCCCTGCGATATATGTGGAAAGCAATTTCAAACTCCCAAGAATTTGGAGATGCATGTACGCAATTTTAGTTTTACCTCCGATATTTGTCCATTGTGTGGCACTGGATTTAGTTCTAAACGTTTTTTACAGTCACATATCACTGCAGCGCATGTACCacatatttcaaaaacttacaattttcattgtgTATTCTGTAACCaaggtttttttaaaaaacacgaTCTTCGGTctcatatattacatttacatgGTCAACAAGTACTCAATACGCTCACATGCAATCCTAATAATCAAGAGAAATCTAATGAATCAGTTACCCATAGCACAGTATGTAATGTTTGTAATTTGGTATTTGAAACTCATGATCGCTATGTTGAGCATCGAAtgtactattataaaaatcatacattTATATGCTCACTTTGTGAACAAAACTTTCAAGGAATGTACATGTTTCATCATCATAACAAACTTACACATTGTCCAGAAGATAAACGCAAGTCATATAATTACATCTGCGAGGTATGTCATGAGGGATTCAATCATGAGTCACATTTTTATTCGCATAATATGCATGTGCATTCGAATGAAGTGAATTTAGGTGAGATTGCAAAAGAATCTGAAGATACCAAGAATAGAAGTCGGGATTCATCTAACGTCCAGAAACAGATTAGAAATTGTTCTACGAatcaagaaaaacaaaatgaacaaTCAAATGAGTATACTTGTCAAATTTGTCAGATGAAATGTAGAAATATGAATCATATGATAATGcacaaagaattttattccaaTGATGGCGATTTTAAATGTGACAAGTGTAATAGACAATGCAAAACATTTGATTTTCTTAATCAACATAAGAAATTAACTCATTCTTGTCGGGATGTTTATAATGGAcatatatgttacatttgtGGCGAAGTCCTGGAAACAGGTATTTTATTGGAATGTCACGAAAAACACTTccattcaaatattatcagcAATAATATGGATAATTGGAAGAATTGTAATCAGCTATCatcttcaaatataatatatctaagtAAATCTAAAAACAATGCATGTAATGTAACTGAATATAAATGCTTATTTTGTGATATGAAGTTCTCTACTCCTAACACTGTCCAAACACATATTGTTTATGTTCATATGGATGATATGATAGCTGAACGAGCTACTTTAAAACTTGCTCTTCCCATTACTAATAGCAATAGCATTCaaaaacaatttgaaattGGTCAAATACCATCAACATCGTCAttgtcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcattatcatcatcatcatcatcatcatcatctgAAAGTAAATTAGCTGAACTTCTTCAAAGATCGACAATTCAACAATCTAGTAACATTGAAAATAGTATAGTTAAAAATGGAATGAACAATAAAACTGTTGAACTGTTTAAGAACTTCAGAACTATgtatcaaaaaaatacaattacggAGAAGACTTCAAATccatgtattaataaatctaaagaCAATATTTcaacatgtaatattattgcattaaataCGGAATCAAAAGATATTCCAGTTTCTTCATCCGTTACAACTTCTAGGATTGTTGCATCAAATACTGAAGTTGGAAACAATGCTTCAGTTTTTTTATCCACTGGATCgatatttaaaactatatcCAATACTGAAtccaaaaataacatttcaatttctttactTGGATCAACCAACAATCTCCGAAAAGGTTATGAAATTCCTTTAAAATCTGGTTCGaccaataaatttaaaactaactCATTAGCTAAggaatctataataattaataaatccaaAACAGTACCTGCATATCTTTTACCAACTAGACCTCTATCAACATTCAAACGTATTATGCCAAAATCTTGGAAAAGCAATGAAATTACAAATCagaaatctgaatcagtgaacACTTATGCTACTGGTCATGGTTATTCATGCCCATTATGTCCTTTAGAATACCCATCCTTGCTGTTCTTCCATGCACATCTCAAATATGCTCATGCAGATTCTATCGTTTCCATTCGAACTAATGAATTGACTGTCCCACAGGTGAATAAATCTCAGAAAGCCTTTATGATAGAATGTTTATTGTGTCCATGTACCTTCCCCGATGAAACCAAGTATAAGAAGCACTTAAGAAACTCTCATACATATTATGTGTATATCCCAAACTCTCaagaaatgacaaaaattaataacgtgCGTAATTCTTTAACACAGATAAACGTTAACAGAAAAAGCACAGTTCCTGAAACAATTACTAtagatgatgataatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgataacgTCAAGAATACATTAGATCAAGGAGCAGCTGAAGTTACAGCGCTCAATTCCAAAGAACAGAATGAGAAAATTGGTAAATTAAGAGTGAAACCTCTTGcaaaaatcattgaaaatttatctatgGATTCTGCATCGAAACTTTTATAG
Protein Sequence: MARVQPYERVVNAVIIHTNPTLGIEIQNGTKIKQEPIDTSSHTDTTEYDTPIVKNYYSLIDHDHHYCDKSLSNKSCKSINNTENRHSNGHNAYSNDVTNIVNTDRKNVKTKKEIDNTLPRFKKRKYSNEIFSNKNTNALCSVTKNVKRKRKQKSIILDYKKKIQCKNKLKKGFTCDICFRKFSCLSYWKIHKQYYKLDKSNKCRVCNKYFIANDKLQSDTCHCVHSMRSTYLSSYNCNFCNRTFKKKLLLQSHLFHVHNELICFNDTVKREISKSKIFKVNISSEDDILRINVNKNSLYSNLVQSEKINTKLINVNKSRTDDVINTEKSKPEKLFNNEVSSIKDKRLRQPTLTEYLELCKKKRNIKFSPSKLNITKDDFPMYAFYHDNQIEKLPEEQNGQIDPLSTQSDNLLLKRTIRSIQKQSMKHEMHKKPFVKLHADVEMMKSFLEKLSDTVVENKITEDGTSNIISYDRGIPYSLRSLNGVSSGEASSNLGMRENKSVSKKSRFGTEFNIKNKRNRIDLEKITSKVDWKIIMTHFKCKECTIFLTRCDKQLRNSYQISAFKAKKNTCLTSGFQESDVRNKVKLKDVEVSLERLTIVPTVHIKEKTPDVEKHNNNYFLCKVCKESFSSKLAKRIHIKSSHIAYMSSICGARYKLKFKLLQHYLREHVSKQNQCCICYMLLSDYEALKQHLNVHCLKYIQRQDDQYLIDTELECNLTKKSKYLRDETFLSRISLKEHQSHCTVQKEIEEDQKDSMEETNLSPKDIPEVQHEKTDNIVDITCNEKINLDDLCNPLNSDSVKKSNEHQISLHNKKEQEINKANQNILVNNNLIKEEIGTINESQHSKKLLENNSTISNQDIANTQLNNIATKNGTYPCDICGKQFQTPKNLEMHVRNFSFTSDICPLCGTGFSSKRFLQSHITAAHVPHISKTYNFHCVFCNQGFFKKHDLRSHILHLHGQQVLNTLTCNPNNQEKSNESVTHSTVCNVCNLVFETHDRYVEHRMYYYKNHTFICSLCEQNFQGMYMFHHHNKLTHCPEDKRKSYNYICEVCHEGFNHESHFYSHNMHVHSNEVNLGEIAKESEDTKNRSRDSSNVQKQIRNCSTNQEKQNEQSNEYTCQICQMKCRNMNHMIMHKEFYSNDGDFKCDKCNRQCKTFDFLNQHKKLTHSCRDVYNGHICYICGEVLETGILLECHEKHFHSNIISNNMDNWKNCNQLSSSNIIYLSKSKNNACNVTEYKCLFCDMKFSTPNTVQTHIVYVHMDDMIAERATLKLALPITNSNSIQKQFEIGQIPSTSSLSSSSSSSSSSSSSSSSLSSSSSSSSSESKLAELLQRSTIQQSSNIENSIVKNGMNNKTVELFKNFRTMYQKNTITEKTSNPCINKSKDNISTCNIIALNTESKDIPVSSSVTTSRIVASNTEVGNNASVFLSTGSIFKTISNTESKNNISISLLGSTNNLRKGYEIPLKSGSTNKFKTNSLAKESIIINKSKTVPAYLLPTRPLSTFKRIMPKSWKSNEITNQKSESVNTYATGHGYSCPLCPLEYPSLLFFHAHLKYAHADSIVSIRTNELTVPQVNKSQKAFMIECLLCPCTFPDETKYKKHLRNSHTYYVYIPNSQEMTKINNVRNSLTQINVNRKSTVPETITIDDDNDDDDDDDDDDDDDDDDNVKNTLDQGAAEVTALNSKEQNEKIGKLRVKPLAKIIENLSMDSASKLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01477929;
90% Identity: iTF_00015709;
80% Identity: -