Aibi005676.1
Basic Information
- Insect
- Atherix ibis
- Gene Symbol
- -
- Assembly
- GCA_958298945.2
- Location
- OY282605.1:117170008-117171477[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.018 82 4.1 0.1 22 43 208 229 203 234 0.86 2 8 0.0047 22 5.9 0.2 21 51 235 264 229 267 0.83 3 8 0.017 79 4.1 1.2 25 46 266 287 258 294 0.83 4 8 0.029 1.4e+02 3.4 0.1 21 46 318 343 312 350 0.85 5 8 0.0002 0.95 10.3 0.1 21 45 374 398 367 401 0.89 6 8 0.021 98 3.8 0.1 21 47 402 428 398 433 0.85 7 8 0.00034 1.6 9.5 0.0 21 46 430 455 426 458 0.91 8 8 0.0015 7 7.5 0.3 21 48 458 485 455 487 0.92
Sequence Information
- Coding Sequence
- atggCTGGGCGAATGCTCGAAATGAAAAGTCTGATCTTTGACGATGATATCAATACGGACAATTGTAGTTTTTCGGTTTGTGATGAGAATGAAGTGTCggattttttattatcagcAGATATGATAAAACAAGAGCCAGAATTTATTATCGACGATGATGTGGAACATAAAAAGATTGAGGATTATTTGGGCAAGAAAAGTGTTGACGAAAAAGATTTGGAATCGCTTATTTGGCATAATTGCATTTTTTGTGAGGAAAGATTCCTAAATGTTGATCAGTTATCGAATCACGTACAAGAACATATTAAACAGAATAGCAAACCGGCTGtagttaaagtaaaaaattacgaTAATCATCGTCATGCTCCCAAAACTGAATATACCGGATTCTCTAGAGAGGAATTGTTCAAGGAATACGTAAAGATAAGTGTGAGTATAGATGGAGATCCTACATATACGTGTAAATTATGTGAGAATAAGAATTTTAACAAACTAATCGGACTACGTAATCATATGAGGATTCATGAGAAACCCATCTATAAGGAGCGTACATGTCAGCAGTGCGGAAAAGTATTTCTTCGGCATGATACGTTAATGATACACATGCGAATCCATACCAGGGAGCGTCCGTTCGCTTGTGATATTTGTAATGCATCGTTTGCACATTCCAGTTCCTTGGTATCCCATAAAAGAATACATTCCGGCGAAAAACCGTACGAATGCGACATTTGCCACAGCAAGTATCGTGAATCCGGTCAGATGACAACGCATCGGAGAACTCATTTTAACAAATCTTACCAGTGTCCACAGTGCCATCAGATGTTTGCCTGTTCGAAGAACTTATCATCACACATTAGAATACACACTGGGGAAAGGCCGTACAATTGCACAACGTGCGGCAAAAACTTTCGAACAACAACTGCGCTCACATTGCATAATCGGGTGCATACCGGCGAGAAACCGTACAAATGTGAGTTTTGCGACTATTCGACGAAGCAATCGGGGTGCTTAAAATCGCACATTAGAACGCACACTGGTGAGAAACCATATAAATGCGATCGCTGTGATAAGGCTTTCTCAGAAAAGAAACGACTGATCACCCACTATCGGACGCATACCGGCGAAAGACCGTACAAATGTCCACATTGCGAATCCACATTCATTCGAAGCGATAATTTACGCGGCCATCTGCGAACACATACCGGCGAAAGACCGTTTGAATGCGAAATTTGCGGTAAACGATTTGCTCAGAAAACTACCCTTCGAACCCACCATAAGGTACATTCAGGTGAAAAGCCATATCAGTGCCCGTTCTGTGATTTAAGATTTCGCCAATCGGGAACACTAGTCACCCATATGCGACTGCATGATGGCGAACGACCGTTCCAGTGTCAAGTGTGTGATCGAGCCTTTAAAGTGAATCGAGACTTAATGCGGCATATTCGAATCgatcataataaaattgtataa
- Protein Sequence
- MAGRMLEMKSLIFDDDINTDNCSFSVCDENEVSDFLLSADMIKQEPEFIIDDDVEHKKIEDYLGKKSVDEKDLESLIWHNCIFCEERFLNVDQLSNHVQEHIKQNSKPAVVKVKNYDNHRHAPKTEYTGFSREELFKEYVKISVSIDGDPTYTCKLCENKNFNKLIGLRNHMRIHEKPIYKERTCQQCGKVFLRHDTLMIHMRIHTRERPFACDICNASFAHSSSLVSHKRIHSGEKPYECDICHSKYRESGQMTTHRRTHFNKSYQCPQCHQMFACSKNLSSHIRIHTGERPYNCTTCGKNFRTTTALTLHNRVHTGEKPYKCEFCDYSTKQSGCLKSHIRTHTGEKPYKCDRCDKAFSEKKRLITHYRTHTGERPYKCPHCESTFIRSDNLRGHLRTHTGERPFECEICGKRFAQKTTLRTHHKVHSGEKPYQCPFCDLRFRQSGTLVTHMRLHDGERPFQCQVCDRAFKVNRDLMRHIRIDHNKIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00176565;
- 90% Identity
- iTF_00176565;
- 80% Identity
- iTF_00176565;