Basic Information

Insect: Atherix ibis
Gene Symbol: -
Assembly: GCA_958298945.2
Location: OY282605.1:117170008-117171477[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 6.4 8.2e+02 1.4 0.8 3 23 81 101 79 101 0.86

2 13 0.0015 0.2 12.8 1.0 1 23 152 175 152 175 0.98

3 13 3.7e-05 0.0047 17.9 1.6 2 23 184 205 184 205 0.98

4 13 6.9e-06 0.00088 20.2 0.6 1 23 211 233 211 233 0.97

5 13 0.00066 0.084 14.0 2.9 1 23 239 261 239 261 0.99

6 13 0.00021 0.027 15.5 3.9 1 23 266 288 266 288 0.99

7 13 1.6e-05 0.0021 19.0 1.4 1 23 294 316 294 316 0.98

8 13 1.5e-05 0.0019 19.1 4.3 1 23 322 344 322 344 0.99

9 13 6.1e-06 0.00078 20.4 2.4 1 23 350 372 350 372 0.99

10 13 5.6e-07 7.1e-05 23.7 2.0 1 23 378 400 378 400 0.99

11 13 4.8e-07 6.2e-05 23.9 2.5 1 23 406 428 406 428 0.98

12 13 4.6e-07 5.8e-05 23.9 0.7 1 23 434 456 434 456 0.99

13 13 3.8e-07 4.9e-05 24.2 0.3 1 23 462 485 462 485 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	6.4	8.2e+02	1.4	0.8	3	23	81	101	79	101	0.86
2	13	0.0015	0.2	12.8	1.0	1	23	152	175	152	175	0.98
3	13	3.7e-05	0.0047	17.9	1.6	2	23	184	205	184	205	0.98
4	13	6.9e-06	0.00088	20.2	0.6	1	23	211	233	211	233	0.97
5	13	0.00066	0.084	14.0	2.9	1	23	239	261	239	261	0.99
6	13	0.00021	0.027	15.5	3.9	1	23	266	288	266	288	0.99
7	13	1.6e-05	0.0021	19.0	1.4	1	23	294	316	294	316	0.98
8	13	1.5e-05	0.0019	19.1	4.3	1	23	322	344	322	344	0.99
9	13	6.1e-06	0.00078	20.4	2.4	1	23	350	372	350	372	0.99
10	13	5.6e-07	7.1e-05	23.7	2.0	1	23	378	400	378	400	0.99
11	13	4.8e-07	6.2e-05	23.9	2.5	1	23	406	428	406	428	0.98
12	13	4.6e-07	5.8e-05	23.9	0.7	1	23	434	456	434	456	0.99
13	13	3.8e-07	4.9e-05	24.2	0.3	1	23	462	485	462	485	0.98

Sequence Information

Coding Sequence: atggCTGGGCGAATGCTCGAAATGAAAAGTCTGATCTTTGACGATGATATCAATACGGACAATTGTAGTTTTTCGGTTTGTGATGAGAATGAAGTGTCggattttttattatcagcAGATATGATAAAACAAGAGCCAGAATTTATTATCGACGATGATGTGGAACATAAAAAGATTGAGGATTATTTGGGCAAGAAAAGTGTTGACGAAAAAGATTTGGAATCGCTTATTTGGCATAATTGCATTTTTTGTGAGGAAAGATTCCTAAATGTTGATCAGTTATCGAATCACGTACAAGAACATATTAAACAGAATAGCAAACCGGCTGtagttaaagtaaaaaattacgaTAATCATCGTCATGCTCCCAAAACTGAATATACCGGATTCTCTAGAGAGGAATTGTTCAAGGAATACGTAAAGATAAGTGTGAGTATAGATGGAGATCCTACATATACGTGTAAATTATGTGAGAATAAGAATTTTAACAAACTAATCGGACTACGTAATCATATGAGGATTCATGAGAAACCCATCTATAAGGAGCGTACATGTCAGCAGTGCGGAAAAGTATTTCTTCGGCATGATACGTTAATGATACACATGCGAATCCATACCAGGGAGCGTCCGTTCGCTTGTGATATTTGTAATGCATCGTTTGCACATTCCAGTTCCTTGGTATCCCATAAAAGAATACATTCCGGCGAAAAACCGTACGAATGCGACATTTGCCACAGCAAGTATCGTGAATCCGGTCAGATGACAACGCATCGGAGAACTCATTTTAACAAATCTTACCAGTGTCCACAGTGCCATCAGATGTTTGCCTGTTCGAAGAACTTATCATCACACATTAGAATACACACTGGGGAAAGGCCGTACAATTGCACAACGTGCGGCAAAAACTTTCGAACAACAACTGCGCTCACATTGCATAATCGGGTGCATACCGGCGAGAAACCGTACAAATGTGAGTTTTGCGACTATTCGACGAAGCAATCGGGGTGCTTAAAATCGCACATTAGAACGCACACTGGTGAGAAACCATATAAATGCGATCGCTGTGATAAGGCTTTCTCAGAAAAGAAACGACTGATCACCCACTATCGGACGCATACCGGCGAAAGACCGTACAAATGTCCACATTGCGAATCCACATTCATTCGAAGCGATAATTTACGCGGCCATCTGCGAACACATACCGGCGAAAGACCGTTTGAATGCGAAATTTGCGGTAAACGATTTGCTCAGAAAACTACCCTTCGAACCCACCATAAGGTACATTCAGGTGAAAAGCCATATCAGTGCCCGTTCTGTGATTTAAGATTTCGCCAATCGGGAACACTAGTCACCCATATGCGACTGCATGATGGCGAACGACCGTTCCAGTGTCAAGTGTGTGATCGAGCCTTTAAAGTGAATCGAGACTTAATGCGGCATATTCGAATCgatcataataaaattgtataa
Protein Sequence: MAGRMLEMKSLIFDDDINTDNCSFSVCDENEVSDFLLSADMIKQEPEFIIDDDVEHKKIEDYLGKKSVDEKDLESLIWHNCIFCEERFLNVDQLSNHVQEHIKQNSKPAVVKVKNYDNHRHAPKTEYTGFSREELFKEYVKISVSIDGDPTYTCKLCENKNFNKLIGLRNHMRIHEKPIYKERTCQQCGKVFLRHDTLMIHMRIHTRERPFACDICNASFAHSSSLVSHKRIHSGEKPYECDICHSKYRESGQMTTHRRTHFNKSYQCPQCHQMFACSKNLSSHIRIHTGERPYNCTTCGKNFRTTTALTLHNRVHTGEKPYKCEFCDYSTKQSGCLKSHIRTHTGEKPYKCDRCDKAFSEKKRLITHYRTHTGERPYKCPHCESTFIRSDNLRGHLRTHTGERPFECEICGKRFAQKTTLRTHHKVHSGEKPYQCPFCDLRFRQSGTLVTHMRLHDGERPFQCQVCDRAFKVNRDLMRHIRIDHNKIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00176769; iTF_00176563; iTF_00176583;
90% Identity: iTF_00176769;
80% Identity: iTF_00176769;