Basic Information

Insect: Atherix ibis
Gene Symbol: -
Assembly: GCA_958298945.2
Location: OY282605.1:117182328-117183875[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0016 0.21 12.7 1.0 1 23 152 175 152 175 0.98

2 13 3.9e-05 0.005 17.8 1.6 2 23 184 205 184 205 0.98

3 13 7.4e-06 0.00094 20.1 0.6 1 23 211 233 211 233 0.97

4 13 0.47 60 5.0 4.7 1 23 239 261 239 261 0.98

5 13 0.0011 0.15 13.2 4.3 1 23 266 288 266 288 0.99

6 13 1.8e-05 0.0022 18.9 1.4 1 23 294 316 294 316 0.98

7 13 3.4e-05 0.0043 18.1 4.1 1 23 322 344 322 344 0.99

8 13 6.5e-06 0.00083 20.3 2.4 1 23 350 372 350 372 0.99

9 13 0.00042 0.053 14.6 5.7 1 23 378 400 378 400 0.99

10 13 2e-06 0.00026 21.9 1.2 1 23 406 428 406 428 0.98

11 13 0.046 5.8 8.2 0.8 8 23 432 447 431 447 0.94

12 13 7.6e-07 9.7e-05 23.2 0.2 1 23 453 475 453 475 0.99

13 13 3.1 4e+02 2.4 0.0 7 23 489 506 484 506 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0016	0.21	12.7	1.0	1	23	152	175	152	175	0.98
2	13	3.9e-05	0.005	17.8	1.6	2	23	184	205	184	205	0.98
3	13	7.4e-06	0.00094	20.1	0.6	1	23	211	233	211	233	0.97
4	13	0.47	60	5.0	4.7	1	23	239	261	239	261	0.98
5	13	0.0011	0.15	13.2	4.3	1	23	266	288	266	288	0.99
6	13	1.8e-05	0.0022	18.9	1.4	1	23	294	316	294	316	0.98
7	13	3.4e-05	0.0043	18.1	4.1	1	23	322	344	322	344	0.99
8	13	6.5e-06	0.00083	20.3	2.4	1	23	350	372	350	372	0.99
9	13	0.00042	0.053	14.6	5.7	1	23	378	400	378	400	0.99
10	13	2e-06	0.00026	21.9	1.2	1	23	406	428	406	428	0.98
11	13	0.046	5.8	8.2	0.8	8	23	432	447	431	447	0.94
12	13	7.6e-07	9.7e-05	23.2	0.2	1	23	453	475	453	475	0.99
13	13	3.1	4e+02	2.4	0.0	7	23	489	506	484	506	0.88

Sequence Information

Coding Sequence: atggCTGGGCGAATGCTCGAAATGAAAAGTCTGATCTTTGACGATGATATCAATACGGACAATTGTAGTTTTTCGGTTTGTGATGAGAATGAAGTGTCggattttttattatcagcAGATATGATAAAACAAGAGCCAGAAATTATTATCGACGATGATGTGGAATATGAAAAGATTAAGGATTATTTGGGCAAGAAAAGTGTTGACGAAAAGGATTTGAAATCGCTCATTTGGCATAATTGCATTTTTTGTGAGGAAAGATTTCTGAACGTTGATCAATTATCGATTCACGTACAAGAACATATTAAACAGAATAGTAAACCGGCTGtagttaaagtaaaaaattacgaTAATCACCGTCATGCTCCCAAAACAGAATATATCGGATTCTCTAGAGAGCAATTGTTCAAGGAATACGTAAAGATAAGTATGAGTATAGATGGAGATAATACCTATACGTGTAAATTATGTGAGAATAAGAATTTTAACAAACTAATCGGACTACGTAATCATATGCGGATTCATGAGAAACCCATCCATAAGGAGCGTACATGTCAGCAGTGCGGAAAAGTATTTCTTCGGCATGATACGTTAATGATACACATGCGAATCCATACCAGGGAGCGTCCGTTCGCTTGTGATATTTGTAATGCATCGTTTGCACATTCCAGTTCCTTGGTATCCCATAAAAGAATACATTCCGGCGAAAAACCGTACGAATGCGACATTTGCCACAGCAAGCATCGTGAATCCGGTCAGATGACAACGCATCGGAGAACTCATTTTAACAAATCTTACCAGTGTCCACAGTGCCATCAGATGTTTGCCTGTTCGAAGTACTTATCATCACACATTAGAATACACACTGGGGAAAGGCCGTACAATTGCACAACGTGCGGCAAAAACTTTCGAACAACAACTGCGCTAACATTGCATAATCGGGTGCATACCGGCGAGAAACCGTACAAATGTGAGTTTTGCGACTATTCGACGAAGCAATCGGGCTGCTTAAAATCGCACATTAGATCGCACACTGGTGAGAAACCATATAAATGCGATCGTTGTGATAAGGCTTTCTCGGAAAAGAAACGACTGATCACCCACTATCGGACGCACACAAGcgaaaaaccttacaaatgtgaACTGTGCGATTatacaaccaaacaaacacatTGTTTGGTAACACATATTCGCACGCACACTGGCGAAAGACCTCACAAATGCGACATATGCGAGAGGGCATTCTCCGATAAAGCCCAACTTGTCACCCACTCTCGCACACACAACGGCGAAAAAACTTTCACACGAAAAACCACACTAAAAACTCACAAGGAAATCCATTCCAAAGAGATGTCCTATGAGTGTGAACTATGCGATAAAAAATTCCGTCTTCCGAATACACTAGCTGCACACATGCGAATCCATGCTGCCAACAACGGTGACTCTAATCAATGTCAAATGAGTGACGAATCGTTCCGCTTAAATCAAGATTTAATAAAACATGTCGAATTGGCGCATAGTATAATCAAAGAGGAGCCACCACTATGA
Protein Sequence: MAGRMLEMKSLIFDDDINTDNCSFSVCDENEVSDFLLSADMIKQEPEIIIDDDVEYEKIKDYLGKKSVDEKDLKSLIWHNCIFCEERFLNVDQLSIHVQEHIKQNSKPAVVKVKNYDNHRHAPKTEYIGFSREQLFKEYVKISMSIDGDNTYTCKLCENKNFNKLIGLRNHMRIHEKPIHKERTCQQCGKVFLRHDTLMIHMRIHTRERPFACDICNASFAHSSSLVSHKRIHSGEKPYECDICHSKHRESGQMTTHRRTHFNKSYQCPQCHQMFACSKYLSSHIRIHTGERPYNCTTCGKNFRTTTALTLHNRVHTGEKPYKCEFCDYSTKQSGCLKSHIRSHTGEKPYKCDRCDKAFSEKKRLITHYRTHTSEKPYKCELCDYTTKQTHCLVTHIRTHTGERPHKCDICERAFSDKAQLVTHSRTHNGEKTFTRKTTLKTHKEIHSKEMSYECELCDKKFRLPNTLAAHMRIHAANNGDSNQCQMSDESFRLNQDLIKHVELAHSIIKEEPPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00176565;
90% Identity: -
80% Identity: -