Aros002622.1
Basic Information
- Insect
- Athalia rosae
- Gene Symbol
- Hr39
- Assembly
- GCA_000344095.2
- Location
- NW:94247-113123[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.9 2.4e+03 -3.2 0.1 87 132 110 154 91 176 0.60 2 6 2.4 6.3e+03 -4.6 17.7 52 164 194 309 182 351 0.60 3 6 3.2 8.4e+03 -5.0 4.8 82 129 340 396 304 441 0.43 4 6 5e-08 0.00013 20.7 0.0 1 21 510 530 510 534 0.92 5 6 0.065 1.7e+02 0.6 0.2 88 148 567 621 542 641 0.51 6 6 2.5e-70 6.5e-67 226.0 0.3 202 408 639 840 629 840 0.96
Sequence Information
- Coding Sequence
- ATGTCGGAGCAGAACGGGCCCCCGGAGGGCCCAGGCTGGTGGCCTCCGGCCCAATCCTGGAAGTCGTCATCGGTCCCTGCAAGACCAGAGGCGGGAAGAAACGTATCTGTGACTACCATCAATGTTCCACCAGCCCACGAAATGCATGACgGTAAAAATGTTAAGTATTTGGGTGGTCGGAACGGTGTGACGGTGTCAGTCGTGTCCGGATGCGCTACCGGAAATGAACCGGAAAATGACGGAGTGGATAGCGACGGCGAAGTAAGCAAGATCGATTTCCGGGGAGTAAATCTCCgcacgaaaaagaaaagggacgCGCCAGAAGGACAGGAAAGCGACGCTAGCACCATCACCGAGGCGATGCTGCAGCAGCCGGAACGCCCCATGTCCTGGGAGGGTGAACTTTCCGATCAAGAAATGTCCTCCAATACAATCACCAATCAAGACCATGAAGAAACATCAATGGAAGGTGTTCAAGTCTGCAGCGCAAGCCCAGGACCAACACATGCACCACAGGAGCCTAAATTCCCGATAAAACTCGAGCCGGAATTTCGCTCGAGTCCTGGGCCACCTTTGGGTACCCCTAACGAAACAACACTATCCAACTCTcaacaacaccaacaacaTCATCAACACCATCCAcagcaacaacatcaacatcaACATCATCAACACCAACAACAGCACCAACAACAGCTCAATATTGACGGACTAGAACAAACTCAGCAAAGTGATTTACCACTACTTGTTGGGAAACTGCTTGGAGGATATAACAATGCGACTCCTAGCCACAGTCCAGTCCTTAATCCAAGACATCATCTGACTAAACATAGTCACACGAGATCACAGGTTCCATCGCCAGACTCGGCGATACATTCGGCATACAGCGTGTTTAGCTCCCCGACACAAAGTCCTCATGCCGCTCGTCACTCGGCGCTCGGAGCTGGAAGTCCTGTGCCTTCTTCATCTTTGTCACTTTCACGCCACAGTTTCAACAATTCAACATCCTCACTATCTTTGTCTCTCTCGCATTCGCTTTCGCGAAATAACTCTGATGCATCCAGCAGCTGCTATAGTTACGGATCTCTCAGTCCACCTACACATTCGCCCGTGCAACAACCGAGACACTCCCATTCTCATACTTCACATCCACACCATCAAGTTGCACCACAAGGCAGTCCTCTACATTTGCCAGTATCGCATCATTATTCAGCAACAAATTCGGAACTTTCCGAGGGGCTAAGTGAGGATCAGGAGGATTGTAAAATAGCACCCGCTACGGCAGGCATTTCGACTAGACAACAGCTCATCAATAGTCCCTGCCCTATCTGTGGTGACAAGATCAGTGGTTTTCACTACGGTATATTTTCTTGCGAGTCTTGTAAAGGATTCTTCAAGAGGACAGTAcagaatcgaaagaattatGTATGCCTTAGAGGAGCTGGATGTTCGGTTACTGTGGCTACACGGAAAAAATGTCCAGCTTGTCGATTCGACAAGTGTTTAAATATGGGAATGAAGTTGGAAGCAATTAGGGAAGACCGAACCCGAGGTGGTAGAAGTACATATCAGTGTAGTTACACGCTCCCGGCAAACTTGGTGGGCTGTACTTCCGGTGGATTACCTGGCGATAAAATGGCCGGAGGAACATGCAGTCCTGCACCTCCTGGGTATGAACATCACCATTCGGCAAGGCACCATTCAAATCACTCGCATAAACTGCACGTGGTGCCGCAGTTGTTGCAAGAAATTATGGATGTGGAACATTTGTGGCATTATAATGACAATGATCGAATGACAAGTGCGCAAAGTAGTGGCAGCAGTAGCAAATCAGAGCAGCCCAGGCCCAGTTCTGTGGGGCCACAAAATACTGAACATGATCCGCACCCACCCAGCAATGCGAATACAAATGCGAATCCATCGCAGCATCCAGACTTTTTGTCAAACCTGTGCAATATTGCAGATCATAGGCTTTATAAAATTGTTAAGTGGTGCAAGAGCTTGCCCCTCTTTAAAAACATTTCAATCGATGATCAAATTTGCCTCCTAATCAATTCGTGGTGTGagttgttgttattttcatgCTGCTTCAGAAGCGTGAATACACCAGGAGAGATTAGAGTCTCTCTTGGGAAATCAATCACACTTGAACAAGCCAGACAGCTGGGTCTCGCTAGTTGCATTGAAAGAATGCTTGCATTCACCAACAACCTTAGACGATTGCGGGTGGACCAATACGAGTACGTCGCGATGAAGGTCATTGTCCTACTGACATCTGACACAAGCGAGTTGAAAGAGCCAGAAAAGGTCCGAGCATCACAGGAGAAAGCATTACAGGCGTTGCAACAGTACACTATTGCCATGTATCCGGAAATGCCAGCCAAGTTTGGCGAACTGCTCCTTCGAATCCCAGATCTACAGCGAACTTGTCAAGCAGGGAAGGAGCTGCTCAGTGCAAAACGAGCAGAAGGAGAAGGTAGTTCCTTCAACCTGTTGATGGAACTGCTACGAGGGGACCACTGA
- Protein Sequence
- MSEQNGPPEGPGWWPPAQSWKSSSVPARPEAGRNVSVTTINVPPAHEMHDGKNVKYLGGRNGVTVSVVSGCATGNEPENDGVDSDGEVSKIDFRGVNLRTKKKRDAPEGQESDASTITEAMLQQPERPMSWEGELSDQEMSSNTITNQDHEETSMEGVQVCSASPGPTHAPQEPKFPIKLEPEFRSSPGPPLGTPNETTLSNSQQHQQHHQHHPQQQHQHQHHQHQQQHQQQLNIDGLEQTQQSDLPLLVGKLLGGYNNATPSHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHSHSHTSHPHHQVAPQGSPLHLPVSHHYSATNSELSEGLSEDQEDCKIAPATAGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCSVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCSYTLPANLVGCTSGGLPGDKMAGGTCSPAPPGYEHHHSARHHSNHSHKLHVVPQLLQEIMDVEHLWHYNDNDRMTSAQSSGSSSKSEQPRPSSVGPQNTEHDPHPPSNANTNANPSQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSVNTPGEIRVSLGKSITLEQARQLGLASCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIAMYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00174217;
- 90% Identity
- iTF_00938835;
- 80% Identity
- iTF_00175815;