Acor008333.1
Basic Information
- Insect
- Athalia cordata
- Gene Symbol
- -
- Assembly
- GCA_963932425.1
- Location
- OZ010626.1:22146565-22151963[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 8.6 7.2e+02 1.0 3.2 2 23 272 294 271 294 0.95 2 21 0.044 3.7 8.2 1.8 1 23 391 413 391 413 0.98 3 21 0.00078 0.064 13.8 0.6 1 23 462 485 462 485 0.96 4 21 0.0019 0.16 12.5 0.2 2 20 538 556 537 558 0.93 5 21 0.0042 0.35 11.4 2.6 3 23 600 621 598 621 0.95 6 21 0.0006 0.05 14.1 0.2 1 23 663 685 663 685 0.97 7 21 0.00063 0.053 14.0 0.1 1 23 691 713 691 713 0.97 8 21 2.9e-05 0.0024 18.3 1.0 3 23 757 778 756 778 0.94 9 21 0.00011 0.0088 16.5 1.6 2 23 786 808 786 808 0.98 10 21 9.4e-06 0.00078 19.8 0.5 2 23 817 839 816 839 0.96 11 21 0.0047 0.39 11.3 0.5 1 23 847 869 847 869 0.92 12 21 0.036 3 8.5 0.1 2 20 926 944 925 944 0.95 13 21 0.019 1.6 9.4 0.3 2 23 964 985 963 985 0.95 14 21 0.00015 0.012 16.0 1.1 1 23 1012 1034 1012 1034 0.97 15 21 0.00015 0.012 16.0 0.9 1 23 1056 1078 1056 1078 0.95 16 21 6.3 5.2e+02 1.5 0.5 1 20 1096 1115 1096 1117 0.83 17 21 0.13 11 6.7 0.8 2 23 1175 1197 1174 1197 0.95 18 21 0.0018 0.15 12.6 0.2 1 23 1226 1249 1226 1249 0.91 19 21 6.4e-06 0.00053 20.3 0.9 2 23 1256 1277 1255 1277 0.97 20 21 0.0055 0.46 11.1 1.6 1 23 1282 1305 1282 1305 0.98 21 21 1.5e-05 0.0012 19.2 1.1 2 23 1341 1363 1340 1363 0.96
Sequence Information
- Coding Sequence
- ATGGATGATGCAGTGTCAATAtcaaacgttgaaaatatctGCAGACTCTGTTTGTCGCCGGATGATCCGAAGTCCTCAATTTTCGATGGGGATGATTCGTCGGTGCCGCTTTCCTTCAAGATACAAGCCTGCTTAGCTATACAGATCTCATCTACCGATAAATTATCGACGCTTATATGCCGACGATGCATAACGAACGTAAACCAATGGCATAGTTACAGAGAATCTTGTCTTAAAGCTCAAGACAAACTTCAACAGTGGCAGATGCAGCAGATGCCCACTCATACGGGACTAACCATAAAACAAGAGCCAATTGATTTAGATTTTGATACAGATCAGACAGAAGCCATAACAGATCCACTTGATACGACTCATGATGAGCAAAATGAAAACGACGGTGTGTGGGCGCTGCATATTACCAACGAGCAATCGGTCCAATCTGaaaaggaaatggaaaaacagaCAAAAAGTGAAGTTCCATGGAGAAGAAGAACCAGAAGCTTTGCTATGCCAATATCTCCGCCAACTATACCGCAGGAATCTGAAAGAAACACATCGGTCTCAAAACCCTATTGTACGATAGAAGTTAAAGACGAACCATTACAAGAAGATGAATATGATTCTAATATAGAAATTGAATCCGTGACGGGTGGTGAGATTTTGCCCAACCCTGTGGCTGTGATTTGTCCTACCGAAGACAGAGTTATGGAGGCTGATTCTACGCAGAGGTCAAATTCCGCGACATTCAAACctaagaaaaaagtgaagagagGACCTCATACGCATTTGCGAAACAAGCACCagttcagaaaaaaatgtgttttctGTCAAATAAATCTTCACTCCAAATATTCTTATGGAAAACACATGGAAAGGTTTCATACTCCTCTACCTGAGTCCGAACAAATCGATAGTAAGACAAACTTGAAGTTGGCCATAAAACAGAAGGCTAAAAGTATAAAGTCTCAATCGGTAGCATTTCAAGACGAAcacagatttttcaaaaataattaccaaGGGGAGAATAGTGCCGTTGAATCGAAGAGCTACAACAAAGATGGCGATGAAGAAATGATCGAGGATGTAGAAGATGAAATCGATAAAATGGACAGGAATTCAGAGACTCCCTTGTCGCAAGTCCAGCAAAATATCATCGGTCAATTGAAAACGTACTCTTGTTATTCTTGCAAACAAGTTTTTCCTGATCGAAGAACTACCCTAAATCATCTCAGACAGCATTTACCAGATCTACGCCCATTCACCTGTGTGGCTTGTCTTACACAATTCCCAGATCGCTTGATTTACAAAAATCACTGTTATACTTCTTTCGAATGCGCCATGAAGATAGCTATAGTTGAGCCAAAGTCTggtttagaaaaatatttcacttgtaACATGTGCTCAAAATCTGTGGCCAATAGACAAGAATTGTTGAACCATCTCACCTCGCAACATTCTGACGACCAAGTGTCAAACGAAATGCCATCATCCTCTAACCAAACACCGGCaaggatattgaaaaaagaccCCACGTCAGCACCTGCTCCTTTGAATTGGTCACACTTACATTTACCTGGTCCTTATGTAAATGGGAATCCCGCATTCAATCTTCCCTGTAACCTGTGTGGGATGATTTATAAACACAAGCGAAATTTGTTAGAGCATCAAACAATTTGTAGCCAACGTCCTGCGAGCGAACGAACGAGTTATGCTTGCGTACATTGCAGGATGACTTTTCTACTATTCAGAAAGTATACCAGCCATCTTTACAGCGTACACAGTACGAGCGAAATTATTTGTTCACTTTgtcgtaaaaaattcaatacacCTACTGATTTTTTGGttcatcataaaaaaaatcatgcgcTCGAAGGTGGACAAGTTGACGGTGAAAGAGCTTCGGTGACCCAGGAAAATTCGTTGAAACAGTGGAATGATTATGAGGAGGAGTTACGCACGAATGAGTCGAGAAGTGGCAGGCAAAAGTACAGCTGTGCGTTATGTGGTCAAGAGTTTTCAACTAGAACAGAACTCGGCGAGCACAGGAATCTGCATTTAAAGGTTAAAATCTATTCGTGCGTCATTTGTCGTAGTATGTTCAGTAGCGCTGGGGCTCTAGAAGTCCACATGAAAGACCATGGTATCGAGGATCCCGCTGAACAGAGTGCTCATACTTCTTGCGTAGAGTACGAAGGTGCAGAAGATACTAAAGATATCACTCTATTGGACAATTCGCGTGACTCGAATTCCGAGGAGTCCGGTGAAATATGCAACATTTGTAACAAGAGTTTCACAAGTTCTGCCAATCGGAAAAGACACATTACAAACGTTCACAAGAACAGTAAAAACCGTCGAAAATGCACCGAATGCAGAAGAGTATTCACGAAGAAGAATGCGTTTGAATATCACATCAGGACCGAGCACAAGCATCCGTCCACCTCCTCGATGACTTGCCCGATGTGTCCTCAGACATTCACGACtagaagaaatttgaatttgcatTACGAAACTGTTCACATAAAGAAAGCCGACGCGTTGCACGAGTGCGATATCTGCGGGAAGCAGTTCAAGGAAGATTTGTCTCTGAAAATTCACAGGGGGTGGCACACGCGGAAGACTCATAGATTGATCAGCGATGTCAAAGGTCTGAACAAGTCCCTACCCATACCACGGACACAGgatattttcaataacttGACAGCATCCGTACCAAAACCTGCAAGAGCTAGAAAATCGTTCCCAAACTCCCCACCGTCGAAGCCAAAACCTCAGTTACAGTGTCAAGTATGCGACGACAAGTTTACCGACGTTGCTGATTTGAGAAAACACCTCTGGGATGTTCATTGCTCTCGCaataagaatgagaagaattaTACAACGAGCGATTTGCAGTGCGAGTTGTGTACTCATACGTTACCCGATAGACCCAGTTTGGAAAGACACTTGGAATGGCATATGGAAAATCCGATATTGAGCGACTCCAAGAACGGTgtgaagagaaagagatattACACGCCGAGAGAATTGAGAACCCACCCCTGCGAAATATGCGGCAATTTCTACACGTCTCGAAGAAGTTTATTGAGGCATCAAAAACTACACAAAGGTAGTACAACTGCTGCTATAAGGTTTCAAGCCGCGGTAAAAAAGCCACTGGCTAACCAGTTCCCGTGCAATGTTTGCAACAAGATATTCGATACTTCGATTAAACTTCGCAAGCATAGAGTCTACCACCTTGTGAAATCCACGGAAAACAAGCGTAATTCAGTTGTCGAAAAATCCGAGTTCCAGTGCAACCTCTGCTTCAAATATCATCCATCCGAAATGGATCTGCAGCTTCATTTGGCAAAGAATTGCCCCTATCGTTCCCAAGAAACGTTAAGTCCTCGTATCAAACGTCGCAGAATCACGTCGACTGTGGAAAGCAATGCATCCGTTGATTTTGAACAGCCAAAACCTGTACCTGTATcttcaaaatcaaattttaaccTCGCCGTTGGCTGGCGTACGAAAAAGATGTGGACTTGCAGCATTTGTCTAAAATCATATCTTGGAAGGAGCTCGTTGTACAAGCATAAAAAGTCTGTTCACGGAAAAGATGCATTTAGTCGTGAAGCATTACTTGCAAAGAAGAAATCAGCTTCTAAGCCCCTTCCGTCGTTGGAGTCTAGCCGTTTTCCATGCATTCTATGTACCAAGAGTTTCCCTACCGCTTTGAACCTGAAGCTTCACATGTCATCTATTCACAAAGATTCTAAACCAAAAAGCTGCAATATTTGTGGTAAAACTTTCAGCAGCAATGTCGGCATAAGAAATCACATGCAGAAACACTCCACCAGTACTTACAGTTGCAACCTATGCCAGCGATTATTCCGTACGCGTCAAGCTGTTTACATGCACATCAGGCGTCAGCATCCGGATGAATATCTAATAATGGAAGACGATAAGAGTCAGTTATGTACCGAACTAATCTCCAAACCTGAAATTCCCATTCCTAAAACAAATGCGCCGACATCTATTCGTTGTGAGTATTGTAATAAGACCTTTGAAACTAACAAGGGGTTAAGAGTTCATGTTAAGAAAAGTCATTCCATGCATCACTAG
- Protein Sequence
- MDDAVSISNVENICRLCLSPDDPKSSIFDGDDSSVPLSFKIQACLAIQISSTDKLSTLICRRCITNVNQWHSYRESCLKAQDKLQQWQMQQMPTHTGLTIKQEPIDLDFDTDQTEAITDPLDTTHDEQNENDGVWALHITNEQSVQSEKEMEKQTKSEVPWRRRTRSFAMPISPPTIPQESERNTSVSKPYCTIEVKDEPLQEDEYDSNIEIESVTGGEILPNPVAVICPTEDRVMEADSTQRSNSATFKPKKKVKRGPHTHLRNKHQFRKKCVFCQINLHSKYSYGKHMERFHTPLPESEQIDSKTNLKLAIKQKAKSIKSQSVAFQDEHRFFKNNYQGENSAVESKSYNKDGDEEMIEDVEDEIDKMDRNSETPLSQVQQNIIGQLKTYSCYSCKQVFPDRRTTLNHLRQHLPDLRPFTCVACLTQFPDRLIYKNHCYTSFECAMKIAIVEPKSGLEKYFTCNMCSKSVANRQELLNHLTSQHSDDQVSNEMPSSSNQTPARILKKDPTSAPAPLNWSHLHLPGPYVNGNPAFNLPCNLCGMIYKHKRNLLEHQTICSQRPASERTSYACVHCRMTFLLFRKYTSHLYSVHSTSEIICSLCRKKFNTPTDFLVHHKKNHALEGGQVDGERASVTQENSLKQWNDYEEELRTNESRSGRQKYSCALCGQEFSTRTELGEHRNLHLKVKIYSCVICRSMFSSAGALEVHMKDHGIEDPAEQSAHTSCVEYEGAEDTKDITLLDNSRDSNSEESGEICNICNKSFTSSANRKRHITNVHKNSKNRRKCTECRRVFTKKNAFEYHIRTEHKHPSTSSMTCPMCPQTFTTRRNLNLHYETVHIKKADALHECDICGKQFKEDLSLKIHRGWHTRKTHRLISDVKGLNKSLPIPRTQDIFNNLTASVPKPARARKSFPNSPPSKPKPQLQCQVCDDKFTDVADLRKHLWDVHCSRNKNEKNYTTSDLQCELCTHTLPDRPSLERHLEWHMENPILSDSKNGVKRKRYYTPRELRTHPCEICGNFYTSRRSLLRHQKLHKGSTTAAIRFQAAVKKPLANQFPCNVCNKIFDTSIKLRKHRVYHLVKSTENKRNSVVEKSEFQCNLCFKYHPSEMDLQLHLAKNCPYRSQETLSPRIKRRRITSTVESNASVDFEQPKPVPVSSKSNFNLAVGWRTKKMWTCSICLKSYLGRSSLYKHKKSVHGKDAFSREALLAKKKSASKPLPSLESSRFPCILCTKSFPTALNLKLHMSSIHKDSKPKSCNICGKTFSSNVGIRNHMQKHSTSTYSCNLCQRLFRTRQAVYMHIRRQHPDEYLIMEDDKSQLCTELISKPEIPIPKTNAPTSIRCEYCNKTFETNKGLRVHVKKSHSMHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00174484;
- 90% Identity
- iTF_00174484; iTF_00175894;
- 80% Identity
- -