Acir021424.1
Basic Information
- Insect
- Athalia circularis
- Gene Symbol
- -
- Assembly
- GCA_963978495.1
- Location
- OZ021702.1:19457119-19462534[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 9.1 9.7e+02 1.0 3.2 2 23 272 294 271 294 0.95 2 21 0.047 5 8.2 1.8 1 23 391 413 391 413 0.98 3 21 0.00082 0.088 13.8 0.6 1 23 462 485 462 485 0.96 4 21 0.002 0.22 12.5 0.2 2 20 538 556 537 558 0.93 5 21 0.0044 0.48 11.4 2.6 3 23 600 621 598 621 0.95 6 21 0.00063 0.068 14.1 0.2 1 23 663 685 663 685 0.97 7 21 0.00067 0.071 14.0 0.1 1 23 691 713 691 713 0.97 8 21 2.6e-05 0.0028 18.5 1.5 2 23 755 777 755 777 0.94 9 21 0.00036 0.039 14.9 1.6 2 23 785 807 785 807 0.98 10 21 2e-05 0.0021 18.8 0.7 2 23 816 838 815 838 0.96 11 21 0.0049 0.53 11.3 0.5 1 23 846 868 846 868 0.92 12 21 0.038 4 8.5 0.1 2 20 925 943 924 943 0.95 13 21 0.02 2.1 9.4 0.3 2 23 963 984 962 984 0.95 14 21 0.00016 0.017 16.0 1.1 1 23 1011 1033 1011 1033 0.97 15 21 0.00038 0.04 14.8 2.3 1 23 1055 1077 1055 1077 0.95 16 21 4.3 4.6e+02 2.1 1.4 1 21 1095 1115 1095 1116 0.90 17 21 0.14 15 6.7 0.8 2 23 1174 1196 1173 1196 0.95 18 21 0.0019 0.2 12.6 0.2 1 23 1225 1248 1225 1248 0.91 19 21 6.3e-06 0.00068 20.4 0.9 2 23 1255 1276 1254 1276 0.97 20 21 0.0058 0.62 11.1 1.6 1 23 1281 1304 1281 1304 0.98 21 21 1.5e-05 0.0016 19.3 1.0 2 23 1340 1362 1339 1362 0.96
Sequence Information
- Coding Sequence
- ATGGATGATGCGGTGTCAATATCAAACGTTGAGAATATCTGCAGACTCTGTTTGTCGCCGGATGATCCGAAGTCCTCAATTTTCGATGGGGATGATTCGTCGGTGCCGCTTTCCTTCAAGATACAAGCCTGCTTAGCTATACAGATCTCATCCACCGATAAATTATCAACGCTTATATGCCGACGATGCATAACGAATGTAAACCAATGGCATAGTTACAGAGAATCTTGTCTTAAAGCTCAAGACAAACTTCAACAGTGGCAGATGCAGCAGATGCCCACTCATACGGGATTAACCATAAAACAAGAGCCAATTGATTTAGATTTTGATACAGATCAGACAGAAGCCATAACAGATCCACTTGATACGACTCATGATGAGCAAGATGAAAACGACGGTGTGTGGGCGCTGCATATTACCAACGAGCAATCGGTCCAATCTGaaaaggaaatggaaaaacaGACAAAAAGTGAAGTTCCATGGAGAAGAAGAACCAGAAGCTTTGCCATGCCAATATCTCCGCCAACTATATCGCAGGAATCTGAAAGGAACACATCAGCCTCAAAACCCTATTGTACGGTAGAAGTTAAAGACGAACCATTACAAGAAGATGAATATGATTCTAATATAGAAATTGAATCCGTTACGGGTGGTGAGATTTTGCCAAACCCTGTGGCTGCAATTTGTCCTACCGAAGACAGAGTTATGGAGGCTGATTCTACGCAGAGGTCAAGTTCCGTGACTTTCAAACctaagaaaaaagtgaagaggGGACCTCATACGCATTTGCGAAACAAGCATCagttcagaaaaaaatgtgttttctGTCAAATAAATCTTCACTCCAAATATTCTTACGGAAAACACATGGAGAGGTTTCATACTCCTCTCCCTGAGTCCGAACAAGTCGATAGCAAGACAAACTTGAAGTTGGCCATAAAACAGAAGGCTAAAAGTACAAAGACTCAATCGGCAGCATTTCAAGATGAACACAGATTTTTTAAGAATAATTACCAAGGGGAGAATAGTGGCGTTGAATCGAAGAGCTAcaacaaagatggcgatgaagAAATGATCGAGGATGTGGAAGATGAAATCGATAAAATGGACAGGAATTCAGAGACTCCCTTGTCGCAAGTCCAGCAAAATATCATCGGTCAATTGAAAACGTACTCTTGTTATTCTTGCAAACAAGTTTTTCCTGATCGAAGAACTACCCTAAATCATCTCAGACAGCATTTACCAGATCTACGTCCATTCACCTGTGTGGCTTGTCTTACACAGTTCCCAGATCGTTCGATTTACAAAAATCACTGTTATACTTCTTTTGAGTGCGCCATGAAGATAGCTATAGTTGAGCCAAAGTCTGgtttagaaaaatatttcacttgTAATATGTGCTCAAAATCTGTGGCCAATAGACAAGAATTGTTGAACCATCTTACCTCGCAACATTCTGACGACCAAGTGGCAAATGAAATGCCGTCATCCTCTAACCAAACTCCAGCaaggatattaaaaaaagacCCTGCGTCAGCACCTGCTCCTTTGAATTGGTCACACTTACATTTACCTGGTCCCTATGTCAATGGGAATCCCGCATTTAATCTTCCCTGTAACCTATGTGGAATGATTTATAAACACAAGCGAAATTTGTTGGAGCATCAAACAATTTGTAGGCAACGTCCTGCGAGTGATCGAACGAGTTATGCTTGCGTACATTGCAGGATGACTTTTCTACTCTTCAGAAAGTATACCAGCCATCTGTACAGCGTGCACAGTACAAGTGAAATTATTTGTTCACTTTgtcgtaaaaaattcaatacccCCACTGATTTTTTGGTtcatcataaaaaaaatcatgcgcTCGAAGGTGGACAAGTTGACAGCGAAAGAGTTTCGGTTAACCAGGAAAATTCCTTGAAACAGTGGAATGATTATGAGGAAGAGTTACGCATAAATGAGTCGAGAAGTAGCCGGCAAAAGTACAGCTGTGCATTATGTGGGCAAGAATTTTCAACTAGAACGGAACTCGGGGAGCACAGGAATCTGCATTTAAaggtgaaaatatattcgtgCGTGATTTGTCGTAGTATGTTCAGTAGTGCTGGGGCTCTAGAAGTCCACATGAAAGACCATGGCATCGAAGATCCCGCTGAACAGAGTGCTCATACTTCTTGCGTAGAATACGAAGGGGCAGAAGATACTAAAGATATCACTCTATTGGACGATTCGCGTGACTCGAATTCCGAGTCTGGTGAAACATGCAACATTTGTAACAAGAGTTTCACAAGTTCTGCCAATCGGAAAAGACACATTACAAACGTTCACAAGAACAGTAAAAACCGTCGAAAATGCACCGAATGCAGAAGAGTGTTCACCAAGAAGAATGCGTTTGAATATCACGTCAGGACTGAGCACAAGCATCCGTCCACCTCTTCGATAACTTGCTCGATGTGTCCCCAGACATTCACGactagaaaaaatttgaatttgcaTTACGAAACTATTCACATAAAGAAAGTGGATGCGTTGCACGAGTGCGATATATGCGGAAAACAGTTCAAGGAAGATTTGTCTCTGAAAATTCACAGAGGCTGGCACACCAGGAAGACTCATAGATTGATCAGCGATGTCAAAGGTCTGAACAAGTCCCTACCCATACCACGGACACAGGATATTTTCAATAACTTGACAGCATCCGTACCGAAACCTGCAAGAGCTAGAAAATCATTCCCAAACTCGCCACCGTCGAAGCCAAAACCTCAGTTACAGTGTCAAGTTTGCGATGACAAGTTCACCGACGTTGCTGATTTGAGAAAACACCTCTGGGATGTTCATTGCTCTcgcaataaaaatgaaaagaattacACAACGAGCGATTTGCAGTGCGAATTGTGTACTCATACGTTACCCGACAGACCCAGTTTGGAAAGACACTTGGAATGGCACATGGAAAATCCTATATTGAGCGACTCTAAGAATGGTgtgaagagaaagagatattACACGCCGAGAGAATTAAGAACCCACCCCTGCGAAATATGCGGTAATTTCTACACGTCTCGAAGGAGTTTATTGAGGCATCAAAAACTACACAAAGTTAGTGGCAATGCTGCTGTAAGGTTTCAAGCCGCGGTAAAAAAGCCACTGGCTAATCAGTTTCCGTGCAATGTTTGCCACAAGATATTTGATACTTCAATTAAGCTTCGCAAGCATAGAGTCTACCACCTTGTGAATTCCGCGGAAAACAAGCGTAATTCGGTTGTCGAAAAATCAGACTTCCAGTGCAACCTCTGCTTCAAATATCATACTTCCGAAATGGAACTGCAGCTTCATTTGTCAAAGAATTGCCCCTATCGTTCCCAAGAAACGTTGAGTCCTCGTGTCAAACGTCGCAGAATCATGTCGACCGTGGAAAGCAATGCCTCTGTTGATTTTGAACAGCCAAAACCTGTACCTGTAtcttcaaaatcaaattttaaccTCGCCGTTGGCTGGCGTACGAAAAAGATGTGGACTTGCAGCATTTGTCTAAAATCATACCTTGGAAGGAGCTCATTGTACAAGCATAAAAAGTCTGTTCACGGAAAAGATACACTTAGTCGTGAAGTATTACTTGCGAAGAAGAAATCAGCTTCTAAGCCCCTTCCGTCGTTGGAGCCTAGCCGTTTTCCATGCATTCTATGTACCAAGAGTTTTCCCACCGCTCTAAACCTGAAGCTTCACATGTCATCTATTCACAaagattcaaaatcaaaaagctGCAACATTTGTGGTAAAACTTTTAGCAGCAGTGTGGGCATAAGAAATCACATGCAGAAACACTCCACCAGTACTTACAGTTGCAACCTATGCCAGCGATTATTCCGTACGCGTCAAGCTGTTTATATGCACATCAGGCGTCAGCATCCGGATGAATATCTAATAATGGAAGACGATAAGAGTCAGTTATGTACCGAACTAATCTCCAAACCTGAAATTCCCAATCCTAAAACAAATACGCAGACATCTGTTCGTTGTGAGTATTGTAATAAGAGCTTTGAAACTAACAAGGGGTTAAGAGTTCATGTTAAGAAAAGTCATTCCATGCATCACTAG
- Protein Sequence
- MDDAVSISNVENICRLCLSPDDPKSSIFDGDDSSVPLSFKIQACLAIQISSTDKLSTLICRRCITNVNQWHSYRESCLKAQDKLQQWQMQQMPTHTGLTIKQEPIDLDFDTDQTEAITDPLDTTHDEQDENDGVWALHITNEQSVQSEKEMEKQTKSEVPWRRRTRSFAMPISPPTISQESERNTSASKPYCTVEVKDEPLQEDEYDSNIEIESVTGGEILPNPVAAICPTEDRVMEADSTQRSSSVTFKPKKKVKRGPHTHLRNKHQFRKKCVFCQINLHSKYSYGKHMERFHTPLPESEQVDSKTNLKLAIKQKAKSTKTQSAAFQDEHRFFKNNYQGENSGVESKSYNKDGDEEMIEDVEDEIDKMDRNSETPLSQVQQNIIGQLKTYSCYSCKQVFPDRRTTLNHLRQHLPDLRPFTCVACLTQFPDRSIYKNHCYTSFECAMKIAIVEPKSGLEKYFTCNMCSKSVANRQELLNHLTSQHSDDQVANEMPSSSNQTPARILKKDPASAPAPLNWSHLHLPGPYVNGNPAFNLPCNLCGMIYKHKRNLLEHQTICRQRPASDRTSYACVHCRMTFLLFRKYTSHLYSVHSTSEIICSLCRKKFNTPTDFLVHHKKNHALEGGQVDSERVSVNQENSLKQWNDYEEELRINESRSSRQKYSCALCGQEFSTRTELGEHRNLHLKVKIYSCVICRSMFSSAGALEVHMKDHGIEDPAEQSAHTSCVEYEGAEDTKDITLLDDSRDSNSESGETCNICNKSFTSSANRKRHITNVHKNSKNRRKCTECRRVFTKKNAFEYHVRTEHKHPSTSSITCSMCPQTFTTRKNLNLHYETIHIKKVDALHECDICGKQFKEDLSLKIHRGWHTRKTHRLISDVKGLNKSLPIPRTQDIFNNLTASVPKPARARKSFPNSPPSKPKPQLQCQVCDDKFTDVADLRKHLWDVHCSRNKNEKNYTTSDLQCELCTHTLPDRPSLERHLEWHMENPILSDSKNGVKRKRYYTPRELRTHPCEICGNFYTSRRSLLRHQKLHKVSGNAAVRFQAAVKKPLANQFPCNVCHKIFDTSIKLRKHRVYHLVNSAENKRNSVVEKSDFQCNLCFKYHTSEMELQLHLSKNCPYRSQETLSPRVKRRRIMSTVESNASVDFEQPKPVPVSSKSNFNLAVGWRTKKMWTCSICLKSYLGRSSLYKHKKSVHGKDTLSREVLLAKKKSASKPLPSLEPSRFPCILCTKSFPTALNLKLHMSSIHKDSKSKSCNICGKTFSSSVGIRNHMQKHSTSTYSCNLCQRLFRTRQAVYMHIRRQHPDEYLIMEDDKSQLCTELISKPEIPNPKTNTQTSVRCEYCNKSFETNKGLRVHVKKSHSMHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00175894; iTF_00175232;
- 90% Identity
- iTF_00175232;
- 80% Identity
- -