Acor005467.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Athalia cordata
Gene Symbol
lola
Assembly
GCA_963932425.1
Location
OZ010625.1:63614947-63621933[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 7e-16 9.2e-13 47.7 0.0 2 42 373 414 372 417 0.94

Sequence Information

Coding Sequence
ATGTCGATGCAGCAGTTTTGCCTACGTTGGAACAATCACCAACCTAATTTCATATcggttttttcaaacttactCAACAACGAGACATTGGTCGACGTTACGCTGGCAGCTGAAGGGCGACACCTCCAAGCACATAAAGTTGTACTCTCGGCTTGCAGTACATACTTTCAGTCGTTGTTTACCGTTAATCCTTGTCAACACCCGATCGTTATACTGAAAGATGTCAAGTTCTCAGATCTTAAGATCATGGTAGATTTTATGTATTACGGAGAAGTGAATGTATCCCAAGACCAACTACCATCCATCATCAAgACTGCCGAGAGTTTGAAGATCAAAGGACTTGCCGAAATGCATACCGCATCTGTAACCAAGTGGCCCAGTGGAAGTAGCGAGCCAGGTGGGGGAGATCGTGGTGAATCTTGTTCGCCCAGTCCATCTCCGCTGTCGCCATCGCTACGACGAAAACGCTTGAGAAAGACATCTACCGGATCTACATCAGGATCTGGGGAGAAGTCTgaagaaataaacgaaattaCTTTGGTGGCAACCAACATTGTTAAACCGGAGCCAGCGATTGTTCCTCAGGAAGGCGGTGATCACATGCGTCGCCCTCTAAACGCCAGCACCGAATCACAAGGGAGCATCGACGAAGACCAGATATCAATTATGAGTAACATGGAAAGCAGTTCAGCGACAACACCTGCACAAAGCGAAGGATCGATGCAAGATATAAGTCAGCAATCCGGGGCTAACGCTGCACAGACGTCCGCTGTGTCTCAACCACCGGCCCAtcaagGATTGCAATGGACAATAATGGAGCATACATATCCACGTTTTGCTCTGTCGTCATGTCAAACGAATCTGTCGATCCAAGCACCATCAGCTTTTACGACACCTGAAATAACAACGCCGCCACCGATCAGTGGTCAGTACTCAACTACAAGCACGACTGCATCTAGCTGCGCTCTGACCAACTATTCAAACTCTTCTCATTCAACGGTTCAACACTCCTCAGGCGTGACGACCCCACCGGCGCCGTGTACGACAAACTGCCAAAGTCCCTGCGCTAGCCCACAAACggcaaacaaaagaaaaagatcaacAAATCCGCAagctgatgaaaattttattagagCACTCGACGCCGTACGGTACGGAGGGATAGGTTTTTGCAAGGCAGCACGTATGTTTGGTGTTAATAATCGAACTCTTTGGCTCGAATATAAGAAGCGAGGATACCCTAACAATCGACCGAGTGTTAAATCAAGAGTTAAACAAGAAGTTAACGCCTCACCGCCACCGGCTCAATTGAGCCAACCCATCAATTCGCAAAGTCCTTCTCCCATGGGACCTCCGTCAACGCCACATAGTGCTCTAAATGCTCACACAACGCATACGATGCACATGGCTCATACACCTCATACAATGTTGAGCGGTTATTTAGACAACCGACACAGCGATTTTGCTCTTCAAACTGTGAAACAAGCAGGATCAAAACGTGGTCGTCTACTAATGCGTCAACCTCGTGTTAAAAAAGAGTCAGAACCGGGTCATCCATCGCCGGACAGTGAACCAGGCTCTCCTCACATTGTTGCCTCTCCCGTAAGTTATCCTACGACATCGTCGTCGCATCCATCGTCAACTCCAATTCTAAATCTTCCGCAATCTTCTCAGGCTTGGGAGGATACTCAGAGAACACCGTCTCCTCATATAACTGTAGTGAATCAACAGAGTTTGATGACAGTAAATACTCCGACCAACCTGTTAACCGTCCCGCAACCTTCCTATTTGGTAAAACAGCATTCCCATCCGTTGTTACCCAGTCAACAGCAGAGCGTGTCTGGCAGTTATTTGATACATAGGCAACACTCGAACCCCGAATATCCTGGAAGATCATCTAGCCCTAGTATCGTAATAGATCACGCACCGTTcataaaaacagaagaaagtGTTCACGGGGAAGGAAGAGATGGTAGAGAATCGGGAAGCCACGTTACGGGTTTAAGAGTAAGGACAGCCGAACTTAGACGGAGTTCTTCCTCGCCGCAGACTGGAGTCAGAGGTGAAGTGCGACTTTCTCGGGAAGGATCCAGCGACCAACGACTTGGTCATTGTCCAGTTCAACGACCTGGACCAGCTTTAGGCTGCAATCACTGTTGGAACACAATAGATGCGCATGGTAGGATACTCAGAAGGAAGACTAAATATCATTGTCCAGAATGCCAGACTAATCTATGCATTGTACCCTGCTTCCAAGAATTCCATGAACGTCAAAGAGAAGTCTCCACGTTAAGACCTCTACCAAAAACTAGCTCTATATAA
Protein Sequence
MSMQQFCLRWNNHQPNFISVFSNLLNNETLVDVTLAAEGRHLQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDVKFSDLKIMVDFMYYGEVNVSQDQLPSIIKTAESLKIKGLAEMHTASVTKWPSGSSEPGGGDRGESCSPSPSPLSPSLRRKRLRKTSTGSTSGSGEKSEEINEITLVATNIVKPEPAIVPQEGGDHMRRPLNASTESQGSIDEDQISIMSNMESSSATTPAQSEGSMQDISQQSGANAAQTSAVSQPPAHQGLQWTIMEHTYPRFALSSCQTNLSIQAPSAFTTPEITTPPPISGQYSTTSTTASSCALTNYSNSSHSTVQHSSGVTTPPAPCTTNCQSPCASPQTANKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSVKSRVKQEVNASPPPAQLSQPINSQSPSPMGPPSTPHSALNAHTTHTMHMAHTPHTMLSGYLDNRHSDFALQTVKQAGSKRGRLLMRQPRVKKESEPGHPSPDSEPGSPHIVASPVSYPTTSSSHPSSTPILNLPQSSQAWEDTQRTPSPHITVVNQQSLMTVNTPTNLLTVPQPSYLVKQHSHPLLPSQQQSVSGSYLIHRQHSNPEYPGRSSSPSIVIDHAPFIKTEESVHGEGRDGRESGSHVTGLRVRTAELRRSSSSPQTGVRGEVRLSREGSSDQRLGHCPVQRPGPALGCNHCWNTIDAHGRILRRKTKYHCPECQTNLCIVPCFQEFHERQREVSTLRPLPKTSSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01414083; iTF_00174088; iTF_00939720; iTF_01412233; iTF_01411404; iTF_01413516; iTF_00174414; iTF_01414324; iTF_00939446; iTF_01411642; iTF_00175164; iTF_01413021; iTF_01048825; iTF_01049036;
90% Identity
iTF_01414083;
80% Identity
iTF_00175164;