Npin005372.2
Basic Information
- Insect
- Neodiprion pinetum
- Gene Symbol
- lola
- Assembly
- GCA_021155775.2
- Location
- CM037741.1:5908064-5918908[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.1e-16 1.7e-12 47.7 0.0 2 42 373 414 372 417 0.94 2 2 5.9 1.2e+04 -3.1 0.1 29 36 456 463 456 469 0.80
Sequence Information
- Coding Sequence
- ATGTCGATGCAGCAGTTTTGCCTCCGATGGAACAATCATCAGCCAAATTTCATATCAGTTTTCTCAAACCTATTGAACAACGAGACATTGGTTGACGTAACATTGGCAGCTGAAGGCAGACATCTCCAAGCGCATAAAGTTGTACTATCGGCCTGCAGTACATACTTCCAATCGTTGTTCACCGTCAATCCTTGTCAGCATCCGATCGTCATATTAAAAGACGTCAAGTTTTCCGATCTGAAAATAATGGTCGATTTTATGTACTACGGAGAAGTCAACGTGTCCCAAGATCAACTGCCCTCCATCATTAAGACTGCCGAAAGTCTAAAGATTAAGGGCCTTGCTGAAATGCATACAGCCTCTGTAACCAAGTGGCCAAGTGGAAGCAGTGAACCCGGTGGAGGAGATCGAGGTGAATCTTGTTCTCCCAGTCCATCGCCATTGTCACCGTCGTTGCGACGAAAACGTCTAAGGAAAACATCTACTGGTTCAACTTCTGGTTCAGGTGAAAAGTCGGAGGAAATTAATGAGATAACACTGGTAGCGACCAACGTCATCAAACCTGAGCCGTCAATGATGTCTCAAGAAACTGGCGAACACTTACGACGACCTTTGAACGCTAGCACGGAATCACAAGGAAGTATCGACGAAGACCAGATATCAATTATGAGCAATATGGAAAGCAGTTCTGCTAATACACCGGCGCAGAGTGAAGCATCGATGCAAGATATAAGTCAACAATCCGGGGCTAATGCAGCACAGAGTTCAGCTGTTTCCCAGCCGCCAGCCCATCAAGGACTGCAATGGACAATAATGGAGCACACGTATCCCCGTTTCGCTCTGTCCTCATGTCAAACGAATCTGTCGATCCAAGCACCATCAGCTTTTACGACACCTGAAATAACAACGCCGCCACCGGTCAGTGGTCAGTACTCGACTACGAACACGACCGCATCTAGCTGCGCCCTGACCAACTATTCAAACTCTTCTCATTCAACGGTTCAACACTCCTCAGGCGGGACAACGCCACCGGCGCCGTGTACAACAAACTGCCAAAGTCCCTGCGCTAGCCCACAAACCGCAAACAAGCGAAAAAGATCTACAAATCCACAAgctgatgaaaattttattagagCTCTCGACGCCGTACGGTACGGAGGTATAGGTTTTTGCAAGGCGGCACGTATGTTTGGTGTTAACAATCGAACTCTTTGGCTCGAGTATAAGAAGCGAGGATACCCCAACAATCGTCCCAGTGTGAAATCCAGAGTTAAACAAGAAGTTAACGCTTCGCCGCCGCCTCCGACTCAGCTCAGTCAGCCCATCAATTCGCAAAGTCCTTCGCCCATGGGGCCGCCGTCTACGCCGCATAGTACTCTGAATGCTCATACTACGCATACAATGCACATGGCGCATACACCGCACACCATGCTCAGTGGTTATCTAGACAACAGGCATAGCGATTTTGCCCTTCAGACTGTCCAATGCAAACAGACAGGAACAAAACGTGGTCGGCTACTAATGCGTCAACCCCgtgtaaaaaaagaatcagAACCAGGTCATCCGTCGCCAGATAGCGAACCAGGCTCTCCTCACATTGTTGCCTCTCCGTCGAGCTCCTACACTCCTACGTCTTCTCATCCATCTACCCCAATTCTAAACCTTCCGCAATCTTCTCAAGCATGGGAGGAGACTCAGAGAACACCTTCGCCTCACATTGCTGTGGTTAACCAACAGAACTTATCGACGGCCAACACAGCGACAAATCTTCTAACCGTCCCGCAACCTTCCTACTTAGTCAAACAGCATTCCCATCCACTTTTACCGAGTCAACAGCAGAGCGTGTCCGGCGGTCATTTGATACATAGACAACATTCGAACCCTGAATATCCTGGAAGATCGACTAGTCCTAGTATCATAATAGAACACGCACCATTCATAAAGACAGAAGACAGTAGTCACGGCGAAGGAAGAGATATCAGAGAGCCTGGAAGCAGTATGGGCGGATTAAGAGTAAGGACAGCTGAGTTGAGGCGAAGTTCTTCTTCCCCGCAGACTGGAGTCAGAAGTGAATCGCGACTGTCTCGAGAAGGATCAAGCGATCAACGACTTGGTCATTGTCCGGTACAACGACCTGGACCAGCTTTGGGTTGCAATCATTGTTGGAACACGATAGACGCGCATGGTAGGATACTGAGGAGGAAGACTAAATATCACTGTCCCGAATGCCAAACTAATCTCTGCATTGTACCCTGCTTCCAAGAATTCCATGAACGACAAAGAGAAGTCTCTACCTTAAGACCTCTACCAAAAACTAGTtctatataa
- Protein Sequence
- MSMQQFCLRWNNHQPNFISVFSNLLNNETLVDVTLAAEGRHLQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDVKFSDLKIMVDFMYYGEVNVSQDQLPSIIKTAESLKIKGLAEMHTASVTKWPSGSSEPGGGDRGESCSPSPSPLSPSLRRKRLRKTSTGSTSGSGEKSEEINEITLVATNVIKPEPSMMSQETGEHLRRPLNASTESQGSIDEDQISIMSNMESSSANTPAQSEASMQDISQQSGANAAQSSAVSQPPAHQGLQWTIMEHTYPRFALSSCQTNLSIQAPSAFTTPEITTPPPVSGQYSTTNTTASSCALTNYSNSSHSTVQHSSGGTTPPAPCTTNCQSPCASPQTANKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSVKSRVKQEVNASPPPPTQLSQPINSQSPSPMGPPSTPHSTLNAHTTHTMHMAHTPHTMLSGYLDNRHSDFALQTVQCKQTGTKRGRLLMRQPRVKKESEPGHPSPDSEPGSPHIVASPSSSYTPTSSHPSTPILNLPQSSQAWEETQRTPSPHIAVVNQQNLSTANTATNLLTVPQPSYLVKQHSHPLLPSQQQSVSGGHLIHRQHSNPEYPGRSTSPSIIIEHAPFIKTEDSSHGEGRDIREPGSSMGGLRVRTAELRRSSSSPQTGVRSESRLSREGSSDQRLGHCPVQRPGPALGCNHCWNTIDAHGRILRRKTKYHCPECQTNLCIVPCFQEFHERQREVSTLRPLPKTSSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00174947;
- 90% Identity
- iTF_01414083;
- 80% Identity
- iTF_01049036;