Acen028992.2
Basic Information
- Insect
- Atethmia centrago
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_905333075.2
- Location
- HG995378.1:28434005-28447889[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.7e-15 4.1e-11 44.6 6.4 205 298 17 102 3 104 0.82 2 2 9 6.5e+04 -10.4 18.2 1 46 100 147 91 177 0.48
Sequence Information
- Coding Sequence
- ATGTCCGGCAGCGCGGTTGACGTCATAGCGCGACATCTCATCCCGTCTGTGGTGTACAAAGCGCACCAGCTGCTCAGTGACGCCGGGGAGGGCACGCTAGACGTGCGGTTGCAAAAGCTGTTAACCTCGAAGCAGGCGCTAGAGTCGGAGGTACGCAAGTTGAAACTACAGCTCAACGAAGAACGCGCCGCGAGACAGAACGGAGTCACCAACCATCACGACCAAGAGTACGAGAATGAACTGGACACGGTCCGCAAGGCGCTGTCGGAGGCCAAggcgcgcgcggcgcgggcggaGGCCGAGGCGGCGCTGCAGGCGGCGCAGGGCGCGCGCCTGGAGGCGCAGCTGGCCCGCCTGCGCGCGCGCCACGACGCGCAGGACGCGCACGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGGGAGGCTCGGGAAGCACTCAACCGGGTTGAAGAGTTGGAGACTGAGAACAGCCACCTCACGAAACGACTCGACAAACTCAAGAACGCGAAGTCTGCACTCCTTAAAGACCTGTGA
- Protein Sequence
- MSGSAVDVIARHLIPSVVYKAHQLLSDAGEGTLDVRLQKLLTSKQALESEVRKLKLQLNEERAARQNGVTNHHDQEYENELDTVRKALSEAKARAARAEAEAALQAAQGARLEAQLARLRARHDAQDAHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00952735;
- 90% Identity
- iTF_00172977;
- 80% Identity
- -