Acen028993.1
Basic Information
- Insect
- Atethmia centrago
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_905333075.2
- Location
- HG995378.1:28469486-28475548[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-15 1.1e-11 46.4 6.5 204 298 1 87 1 89 0.84 2 2 9 6.5e+04 -7.6 15.4 1 46 85 132 85 160 0.43
Sequence Information
- Coding Sequence
- ATGGTCACGCACCAGGCGCAGCAGCTGCTCGGTGACGCCGGGGAGGGCACGCTAGACGTGCGGTTGCAAAAGCTGTTAACCTCGAAGCAGGCGCTAGAGTCGGAGGTACGCAAGTTGAAACTACAGCTCAACGAAGAACGCGCCGCGAGACAGAACGGAGTCACCAACCATCACGACCAAGAGTACGAGAATGAACTGGACACGGTCCGCAAGGCGCTGTCGGAGGCCAAggcgcgcgcggcgcgggcggaGGCCGAGGCGGCGCTGCAGGCGGCGCAGGGCGCGCGCCTGGAGGCGCAGCTGGCCCGCCTGCGCGCGCGCCACGACGCGCAGGACGCGCACGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGGGAGGCTCGGGAAGCACTCAACCGGGTTGAAGAGTTGGAGACTGAGAACAGCCACCTCACGAAACGACTCGACAAACTCAAGAACGCGAAGTCTGCACTCCTTAAAGACCTGTGA
- Protein Sequence
- MVTHQAQQLLGDAGEGTLDVRLQKLLTSKQALESEVRKLKLQLNEERAARQNGVTNHHDQEYENELDTVRKALSEAKARAARAEAEAALQAAQGARLEAQLARLRARHDAQDAHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00952735;
- 90% Identity
- iTF_00172977;
- 80% Identity
- iTF_00172979; iTF_00172980;