Ajap003764.1
Basic Information
- Insect
- Asobara japonica
- Gene Symbol
- -
- Assembly
- GCA_017141405.1
- Location
- JADHZF010000012.1:3247002-3254348[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.3e-12 1.9e-09 37.8 0.0 1 39 312 351 312 355 0.90 2 4 1e-11 5.7e-09 36.3 0.1 2 39 367 404 366 407 0.94 3 4 3.6e-18 2.1e-15 56.9 0.0 2 45 422 466 421 466 0.97 4 4 4.2e-18 2.4e-15 56.7 0.1 1 42 473 515 473 516 0.97
Sequence Information
- Coding Sequence
- ATGGATATCATGGATCATGGATTTCATCATAATGTTAGATCTCTGCTGAAAACCGCCGATCAATTGAAGATCAAGGGCCTTTGCGAGGTGCCTGAGAGCAGAGAGGGTTCGGCATCAGTAAGCCTGAGTTCACCACCAAGGGAGCCCGGTACACCTAGACTAAACTATACAAAATTGAAGAGACATCATCCCAAGTACAAGAGAGCAAGAACATCGTTTGAAGCGATAACTGGGAGTCCTGAATTACGCTGTGACAAGAACGACAAGTGCACAGAGGACGATAAAAGCAAAGAGGACGACAAATACGGAGAAGACGACAAATACAAAGAGGAGGAGATAGATATAGACGAAGAGAGTGTGATTGATTTGGATCTTGGACGTGAAAATACGGAGAATCACCGGGGTGACTGGCAGACAACGACGGAGGATGAGGAGTGTGGTGCTGAGGCAGTAGTCCTGGAATCCTGCCAACGAGACATCAACAACGGTAACGGAACAAACAACAATAACGGTGACATGTTTTGTCACACAGGTCTAGGTCATTACGGGCATCATCCGGATCCAGGAGATGTCGATCTACCCCCGGAAACACAACCGACACCCCCCAGCGCCACCTTGGTGGGGACCACAGTCACGCACTTGCGAGACTCCGATCACGTGACAGATATTCAGAACTGTGACAGTGTTAAGATAAAGTTCGAAACCCTTCATACGATGGACTCGTCAGACACAATTGACATAGACAGCCACATGTCGGATCGTGCCAGTGTCAGTTCGAAGCATGGAGCTGAGAGTGACAATATGATGATGATAACACCTGAGCTTTTGGGTCTAATGCCATCGGGAAGCTCTGTGCACTCGGACTCGGGTGAAAATAATTCTAGGGGACATTCGGGTGGCTCCGGACATTATCATGGTACATCCAAATCTTGGACGCAGGAGGATATGGATGCTGCACTTGAAGCACTTAGAAATCATGACATGAGTTTAACCAAGGCATCTGCGACTTTTGGAATTCCCTCGACAACGTTATGGCAGAGGGCACACAGGCTGGGTATAGATACACCAAAAAAAGATGGACCAACAAAATCGTGGAGCGATGAGAGCTTGAACAATGCCCTTGAGGCCCTGAGAACTGGTACGATATCAGCGAATAAAGCATCAAAGGCATTTGGAATACCGTCCAGTACACTGTACAAAATAGCTAGGAGGGAGGGTATACGATTGGCGGCGCCCTTCAATGCCAGTCCAACAACTTGGTCGCCAGCGGATCTTGACAGAGCACTGGAGGCCATCAGGTCTGGACAGACATCAGTTCAAAGGGCCTCCACGGAGTTTGGCATACCCACAGGCACACTCTATGGCAGATGTAAACGTGAGGGCATTGAATTGAGCAGGAGCAATCCTACTCCCTGGAGTGAAGACGCCATGACTGAGGCCCTCGAGGCTGTTCGGTTGGGTCACATGAGCATAAATCAAGCAGCTATACACTACAACTTGCCGTACTCATCACTGTACGGGCGTTTCAAGCGTGGAAAATACGAGGAACCAGTGATAAATGAAATGTCACAGGACGGTACAAATCCACATTTCCATCCAAGCCCACACCAGAATCACTCATCGCCACTTCCTGATCAAATGCCCTACCAGGGCAGCTGA
- Protein Sequence
- MDIMDHGFHHNVRSLLKTADQLKIKGLCEVPESREGSASVSLSSPPREPGTPRLNYTKLKRHHPKYKRARTSFEAITGSPELRCDKNDKCTEDDKSKEDDKYGEDDKYKEEEIDIDEESVIDLDLGRENTENHRGDWQTTTEDEECGAEAVVLESCQRDINNGNGTNNNNGDMFCHTGLGHYGHHPDPGDVDLPPETQPTPPSATLVGTTVTHLRDSDHVTDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKHGAESDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGGSGHYHGTSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVINEMSQDGTNPHFHPSPHQNHSSPLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00438668;
- 80% Identity
- -