Basic Information

Insect: Arma custos
Gene Symbol: -
Assembly: GCA_037127475.1
Location: CM073762.1:3554354-3561469[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 31 0.12 3e+02 3.7 0.3 18 48 177 207 171 209 0.78

2 31 0.0076 18 7.5 0.4 21 49 209 237 203 241 0.87

3 31 0.029 70 5.7 0.5 17 48 234 265 233 267 0.88

4 31 0.0074 18 7.6 1.1 17 48 263 294 260 299 0.82

5 31 0.012 29 6.9 0.5 16 49 349 382 341 386 0.90

6 31 0.012 29 6.9 0.6 17 49 379 411 377 417 0.83

7 31 0.075 1.8e+02 4.4 0.4 17 48 408 439 405 441 0.81

8 31 0.0014 3.4 9.9 0.5 17 48 437 468 434 470 0.92

9 31 0.0091 22 7.3 0.8 18 49 467 498 465 502 0.90

10 31 0.066 1.6e+02 4.5 0.6 18 49 496 527 494 532 0.84

11 31 0.019 47 6.3 0.4 17 48 524 555 522 558 0.91

12 31 0.00069 1.7 10.9 0.5 17 49 553 585 546 589 0.89

13 31 0.024 57 6.0 0.6 17 48 582 613 580 616 0.88

14 31 0.007 17 7.7 1.1 17 48 611 642 608 648 0.82

15 31 0.018 43 6.4 0.4 16 48 697 729 689 731 0.91

16 31 0.0069 17 7.7 0.8 17 48 727 758 724 760 0.89

17 31 0.00079 1.9 10.7 0.5 17 49 756 788 753 792 0.90

18 31 0.0097 24 7.2 0.6 17 48 785 816 783 818 0.91

19 31 0.00055 1.3 11.2 0.5 16 48 813 845 808 849 0.89

20 31 0.14 3.5e+02 3.5 0.3 18 48 844 874 842 877 0.84

21 31 0.018 43 6.4 0.9 17 49 872 904 867 909 0.88

22 31 0.11 2.6e+02 3.9 0.4 17 49 901 933 897 937 0.84

23 31 0.01 24 7.2 0.7 17 48 930 961 920 963 0.92

24 31 0.0018 4.4 9.5 0.8 17 48 959 990 955 994 0.92

25 31 0.0021 5.1 9.3 0.6 17 49 988 1020 987 1024 0.88

26 31 0.021 50 6.1 0.8 17 49 1017 1049 1016 1054 0.86

27 31 0.089 2.2e+02 4.1 1.7 17 48 1046 1077 1043 1083 0.83

28 31 1.8 4.2e+03 -0.0 0.1 21 49 1079 1107 1073 1112 0.87

29 31 0.26 6.3e+02 2.6 0.3 17 49 1104 1136 1091 1140 0.81

30 31 0.025 61 5.9 0.6 17 49 1133 1165 1129 1170 0.87

31 31 0.041 98 5.2 0.8 17 49 1162 1194 1161 1198 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	31	0.12	3e+02	3.7	0.3	18	48	177	207	171	209	0.78
2	31	0.0076	18	7.5	0.4	21	49	209	237	203	241	0.87
3	31	0.029	70	5.7	0.5	17	48	234	265	233	267	0.88
4	31	0.0074	18	7.6	1.1	17	48	263	294	260	299	0.82
5	31	0.012	29	6.9	0.5	16	49	349	382	341	386	0.90
6	31	0.012	29	6.9	0.6	17	49	379	411	377	417	0.83
7	31	0.075	1.8e+02	4.4	0.4	17	48	408	439	405	441	0.81
8	31	0.0014	3.4	9.9	0.5	17	48	437	468	434	470	0.92
9	31	0.0091	22	7.3	0.8	18	49	467	498	465	502	0.90
10	31	0.066	1.6e+02	4.5	0.6	18	49	496	527	494	532	0.84
11	31	0.019	47	6.3	0.4	17	48	524	555	522	558	0.91
12	31	0.00069	1.7	10.9	0.5	17	49	553	585	546	589	0.89
13	31	0.024	57	6.0	0.6	17	48	582	613	580	616	0.88
14	31	0.007	17	7.7	1.1	17	48	611	642	608	648	0.82
15	31	0.018	43	6.4	0.4	16	48	697	729	689	731	0.91
16	31	0.0069	17	7.7	0.8	17	48	727	758	724	760	0.89
17	31	0.00079	1.9	10.7	0.5	17	49	756	788	753	792	0.90
18	31	0.0097	24	7.2	0.6	17	48	785	816	783	818	0.91
19	31	0.00055	1.3	11.2	0.5	16	48	813	845	808	849	0.89
20	31	0.14	3.5e+02	3.5	0.3	18	48	844	874	842	877	0.84
21	31	0.018	43	6.4	0.9	17	49	872	904	867	909	0.88
22	31	0.11	2.6e+02	3.9	0.4	17	49	901	933	897	937	0.84
23	31	0.01	24	7.2	0.7	17	48	930	961	920	963	0.92
24	31	0.0018	4.4	9.5	0.8	17	48	959	990	955	994	0.92
25	31	0.0021	5.1	9.3	0.6	17	49	988	1020	987	1024	0.88
26	31	0.021	50	6.1	0.8	17	49	1017	1049	1016	1054	0.86
27	31	0.089	2.2e+02	4.1	1.7	17	48	1046	1077	1043	1083	0.83
28	31	1.8	4.2e+03	-0.0	0.1	21	49	1079	1107	1073	1112	0.87
29	31	0.26	6.3e+02	2.6	0.3	17	49	1104	1136	1091	1140	0.81
30	31	0.025	61	5.9	0.6	17	49	1133	1165	1129	1170	0.87
31	31	0.041	98	5.2	0.8	17	49	1162	1194	1161	1198	0.80

Sequence Information

Coding Sequence: ATGTGGAAGCACATTAGAGACGCTTTCATGAAGCACAATCGACCCCCGAAATCTGGTGATCCAGCtccgaaaagaaaaaaatatgtctaCGCAGATGCTTTAACTTTCCTGAAGAATTCACTAGAAAAGAGAAAGACTTCCGGTAATTTCGAAGATGAGGAGTCAATAGCTAATGTGAGATCCCCAGAGGAAGAGGGGGAGGAGTCGGTAGAATTGCGTGAAGGAATGGATTCTCCTGCTGTATCTATGCTTGCAACTCCTTGCCCTTCACCTGCACCTTCTAGTAGAAGAAAAGGAGGTGCTTCACGGATGTCAGAGTTCCAGAGTATTCTTCTGGAGAAAATTTCTGCTCCACAGCGACAAGATGAAGATGCTGATTGCAAGTTTCTCCTGTCCCTTCATCCAAGAATGGCCAAATTAAtagacCCTCAAGGCTTACTCAACGAGACAGGCGAGAAGcttcatcaatgtcctcattgtgaattTAGATCAGTTCGAACTAGTACATTAAAACTGCATACAATGTATCGTCATtctggtgagaagcctcatcaatgtcctcattgtgaatataaaacaattcaaaataGTGACTTACAACTGCATATTAAGGCTCATCATACTGGTGAGAaccctcatcaatgtcctcattgtgattataaaacaaTTCGAAATAGTGACTTAAAAGTACATATAAAGGCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgaatataaatcaGTTCAAGGTAGTCACTTAAAAGTACATATAAAGGCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgattataaaacaattcaaaataGTCACTTAAAAATGCATATAAAGACTCGTCATAATGGTGAGAACCCTCATCAGTGTCAttattgtgaatataaaacCGCACTTAAATCATcattaaaaatgcatataaATGCTTGTCATACTGGTAATAAGCCTCATCAATCTCCTCATTGTGAATTTAAATTCGTTCAAACTAGTACCTTAAAACAGCATATAAAGTCTCGTCATACCgatgagaagcctcatcaatgtcctcagtGTGAATTTAAATCAGTTCAAGCTGGTCACTTAAAAATCCATATAATGTCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgaatataaagcaaTTCAAAATAGTGACTTACAACTGCATATAATGTCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgaattTAAATCAGTTCGAACTAGTCACTTAAAACTCCATATAATGTCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgattataaaacaaTTCGAAATAGTGACTTAAAAGTACATATAAAGGCTCGTCATcctggtgagaagcctcatcaatgtcctcattgtgaataTATATCAGTTCAAGGTAGTCACTTAAAAGTACATATAAAGGCtcgtcatactggtgagaagcttcatcaatgtcctcattgtgaatataaaacaattcGAAATAGTGACTTAAAAGTACATATAAAGGCTCGTCATACTggtgaaaagcctcatcaatgtcctcattgtgaattTAAATCCGTTCAAACTAGTACCTTAAAACAGCATATAATGTCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgattataaaacaaTTCGAAATAGTGACTTAAAAGTACATATAAAGGCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgaatataaatcaGTTCAAGGTAGTCACTTAAAAGTACATATAAAGGCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgattataaaacaattcaaaataGTCACTTAAAAATGCATATAAAGACTCGTCATAATGGTGAGAACCCTCATCAGTGTCAttattgtgaatataaaacCGCACTTAAATCATcattaaaaatgcatataaATGCTTGTCATACTGGTAATAAGCCTCATCAATCTCCTCATTGTGAATTTAAATCCGTTCAAACTAGTACCTTAAAACAGCATATAAAGTCTCGTCATACCgatgagaagcctcatcaatgtcctcagtGTGAATTTAAATCAGTTCAAGCTGGTCACTTAAAAATCCATATAATGTCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgaatataaagcaaTTCGAACTAGTCACTTAAAACTCCATATAATGTCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgattataaaacaaTTCGAAATAGTGACTTAAAAGTACATATAAAGGCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgaataTATATCAGTTCAAGGTAGTCACTTAAAAGAACATATAATGTCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgattataaaacaaTTCGAAATAGTGACTTAAAAGTACATATAAAGGCtcgtcatactggtgagaagcttcatcaatgtcctcattgtgattataaagcAATTCGAACTAGTACCTTAAAACAGCATATAATGTCtcgtcatactggtgagaagtCTCATCACTGCcctcattgtgaatataaaacaattcGAAATAGTGACTTAAAAGTACATATAAAGGCTCGTCATACTggtgaaaagcctcatcaatgtcctcattgtgaattTAAATCCGTTCACACTAGTACCTTAAAACAGCATATAATGTCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgaattTAAATCCGTTCAAACTAGTACCTTAAAACAGCATATAATGTCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgaataTATATCAGTTCAAGGTAGTCAGTTAAAAGTACATATAAAGGCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgattataaaacaaTTCGAAATAGTGACTTAAAAGTACATATAAAGGCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgaatataaatcaGTTCAAGGTAGTCACTTAAAAGTACATATAAAGGCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgaatataaaacaattcGAAATGGTCACTTACAACAGCATATTAAGGCTCAtcatactggtgagaagccTTATCAGTGTCATTATTGTGAACATAAAACCGCACagaaatcaatattaaaatcacATATAATGTCtcgtcatactggtgagaagcctcatcaatgtcatcattgtgaatttaaaacaagtcGAAATAGTCACTTAAAACTACATATAAAGGCtcgtcatactggtgagaagcctcatcaatgtactcattgtgaatataaatcaGTTCAAGGTAGTAACTTAAAACAGCATATAATGTCTCGTCATACTGGTatgaagcctcatcaatgtcctcattgtgattataaaacaattcaaaataGTCACTTAAAAATGCATATAAAGGCtcgtcatactggtgagaagccTTATAAATGTTATCATTGTAACTGTAAAGCAATCGAtcttatagttttaaaatcaCATATAATTGCTCATCATTCAAGTGAGAAGCCTCATTAA
Protein Sequence: MWKHIRDAFMKHNRPPKSGDPAPKRKKYVYADALTFLKNSLEKRKTSGNFEDEESIANVRSPEEEGEESVELREGMDSPAVSMLATPCPSPAPSSRRKGGASRMSEFQSILLEKISAPQRQDEDADCKFLLSLHPRMAKLIDPQGLLNETGEKLHQCPHCEFRSVRTSTLKLHTMYRHSGEKPHQCPHCEYKTIQNSDLQLHIKAHHTGENPHQCPHCDYKTIRNSDLKVHIKARHTGEKPHQCPHCEYKSVQGSHLKVHIKARHTGEKPHQCPHCDYKTIQNSHLKMHIKTRHNGENPHQCHYCEYKTALKSSLKMHINACHTGNKPHQSPHCEFKFVQTSTLKQHIKSRHTDEKPHQCPQCEFKSVQAGHLKIHIMSRHTGEKPHQCPHCEYKAIQNSDLQLHIMSRHTGEKPHQCPHCEFKSVRTSHLKLHIMSRHTGEKPHQCPHCDYKTIRNSDLKVHIKARHPGEKPHQCPHCEYISVQGSHLKVHIKARHTGEKLHQCPHCEYKTIRNSDLKVHIKARHTGEKPHQCPHCEFKSVQTSTLKQHIMSRHTGEKPHQCPHCDYKTIRNSDLKVHIKARHTGEKPHQCPHCEYKSVQGSHLKVHIKARHTGEKPHQCPHCDYKTIQNSHLKMHIKTRHNGENPHQCHYCEYKTALKSSLKMHINACHTGNKPHQSPHCEFKSVQTSTLKQHIKSRHTDEKPHQCPQCEFKSVQAGHLKIHIMSRHTGEKPHQCPHCEYKAIRTSHLKLHIMSRHTGEKPHQCPHCDYKTIRNSDLKVHIKARHTGEKPHQCPHCEYISVQGSHLKEHIMSRHTGEKPHQCPHCDYKTIRNSDLKVHIKARHTGEKLHQCPHCDYKAIRTSTLKQHIMSRHTGEKSHHCPHCEYKTIRNSDLKVHIKARHTGEKPHQCPHCEFKSVHTSTLKQHIMSRHTGEKPHQCPHCEFKSVQTSTLKQHIMSRHTGEKPHQCPHCEYISVQGSQLKVHIKARHTGEKPHQCPHCDYKTIRNSDLKVHIKARHTGEKPHQCPHCEYKSVQGSHLKVHIKARHTGEKPHQCPHCEYKTIRNGHLQQHIKAHHTGEKPYQCHYCEHKTAQKSILKSHIMSRHTGEKPHQCHHCEFKTSRNSHLKLHIKARHTGEKPHQCTHCEYKSVQGSNLKQHIMSRHTGMKPHQCPHCDYKTIQNSHLKMHIKARHTGEKPYKCYHCNCKAIDLIVLKSHIIAHHSSEKPH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00165376;
90% Identity: iTF_00165376;
80% Identity: iTF_00165376;