Acus042672.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- -
- Assembly
- GCA_037127475.1
- Location
- CM073762.1:3554354-3561469[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 37 0.098 21 7.8 4.9 1 23 155 178 155 178 0.95 2 37 0.00073 0.16 14.5 4.2 1 23 184 206 184 207 0.95 3 37 6.4e-05 0.014 17.8 2.7 1 23 213 236 213 236 0.96 4 37 0.0081 1.8 11.2 3.8 1 23 242 265 242 265 0.95 5 37 0.0002 0.042 16.3 6.8 1 23 271 294 271 294 0.98 6 37 0.068 15 8.3 6.1 1 23 300 323 300 323 0.95 7 37 0.014 3.1 10.4 1.3 4 23 332 352 331 352 0.96 8 37 0.003 0.65 12.6 1.7 1 23 358 381 358 381 0.97 9 37 0.00092 0.2 14.2 1.8 1 23 387 410 387 410 0.97 10 37 0.014 3 10.5 6.0 1 23 416 439 416 439 0.97 11 37 6.4e-05 0.014 17.8 2.7 1 23 445 468 445 468 0.96 12 37 0.007 1.5 11.4 2.7 1 23 474 497 474 497 0.96 13 37 0.00022 0.047 16.2 2.7 1 23 503 526 503 526 0.96 14 37 0.0082 1.8 11.2 4.1 1 23 532 555 532 555 0.97 15 37 6.4e-05 0.014 17.8 2.7 1 23 561 584 561 584 0.96 16 37 0.0081 1.8 11.2 3.8 1 23 590 613 590 613 0.95 17 37 0.0002 0.042 16.3 6.8 1 23 619 642 619 642 0.98 18 37 0.068 15 8.3 6.1 1 23 648 671 648 671 0.95 19 37 0.51 1.1e+02 5.6 1.1 4 23 680 700 680 700 0.95 20 37 0.003 0.65 12.6 1.7 1 23 706 729 706 729 0.97 21 37 0.009 1.9 11.1 4.9 1 23 735 758 735 758 0.97 22 37 6.4e-05 0.014 17.8 2.7 1 23 764 787 764 787 0.96 23 37 0.0072 1.6 11.4 3.2 1 23 793 816 793 816 0.97 24 37 6.4e-05 0.014 17.8 2.7 1 23 822 845 822 845 0.96 25 37 0.0013 0.28 13.7 3.4 1 23 851 874 851 874 0.97 26 37 0.0028 0.61 12.7 4.6 1 23 880 903 880 903 0.94 27 37 0.037 7.9 9.2 6.2 1 23 909 932 909 932 0.97 28 37 0.0082 1.8 11.2 4.1 1 23 938 961 938 961 0.97 29 37 0.0042 0.91 12.1 1.2 1 23 967 990 967 990 0.95 30 37 6.4e-05 0.014 17.8 2.7 1 23 996 1019 996 1019 0.96 31 37 0.0081 1.8 11.2 3.8 1 23 1025 1048 1025 1048 0.95 32 37 0.0021 0.46 13.0 6.8 1 23 1054 1076 1054 1077 0.95 33 37 0.04 8.6 9.0 4.7 1 23 1083 1106 1083 1106 0.98 34 37 0.016 3.4 10.3 9.6 1 23 1112 1135 1112 1135 0.96 35 37 0.0064 1.4 11.5 4.0 1 23 1141 1164 1141 1164 0.97 36 37 0.00046 0.1 15.1 5.4 1 23 1170 1193 1170 1193 0.96 37 37 4.5 9.7e+02 2.6 3.5 1 23 1199 1221 1199 1222 0.94
Sequence Information
- Coding Sequence
- ATGTGGAAGCACATTAGAGACGCTTTCATGAAGCACAATCGACCCCCGAAATCTGGTGATCCAGCtccgaaaagaaaaaaatatgtctaCGCAGATGCTTTAACTTTCCTGAAGAATTCACTAGAAAAGAGAAAGACTTCCGGTAATTTCGAAGATGAGGAGTCAATAGCTAATGTGAGATCCCCAGAGGAAGAGGGGGAGGAGTCGGTAGAATTGCGTGAAGGAATGGATTCTCCTGCTGTATCTATGCTTGCAACTCCTTGCCCTTCACCTGCACCTTCTAGTAGAAGAAAAGGAGGTGCTTCACGGATGTCAGAGTTCCAGAGTATTCTTCTGGAGAAAATTTCTGCTCCACAGCGACAAGATGAAGATGCTGATTGCAAGTTTCTCCTGTCCCTTCATCCAAGAATGGCCAAATTAAtagacCCTCAAGGCTTACTCAACGAGACAGGCGAGAAGcttcatcaatgtcctcattgtgaattTAGATCAGTTCGAACTAGTACATTAAAACTGCATACAATGTATCGTCATtctggtgagaagcctcatcaatgtcctcattgtgaatataaaacaattcaaaataGTGACTTACAACTGCATATTAAGGCTCATCATACTGGTGAGAaccctcatcaatgtcctcattgtgattataaaacaaTTCGAAATAGTGACTTAAAAGTACATATAAAGGCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgaatataaatcaGTTCAAGGTAGTCACTTAAAAGTACATATAAAGGCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgattataaaacaattcaaaataGTCACTTAAAAATGCATATAAAGACTCGTCATAATGGTGAGAACCCTCATCAGTGTCAttattgtgaatataaaacCGCACTTAAATCATcattaaaaatgcatataaATGCTTGTCATACTGGTAATAAGCCTCATCAATCTCCTCATTGTGAATTTAAATTCGTTCAAACTAGTACCTTAAAACAGCATATAAAGTCTCGTCATACCgatgagaagcctcatcaatgtcctcagtGTGAATTTAAATCAGTTCAAGCTGGTCACTTAAAAATCCATATAATGTCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgaatataaagcaaTTCAAAATAGTGACTTACAACTGCATATAATGTCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgaattTAAATCAGTTCGAACTAGTCACTTAAAACTCCATATAATGTCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgattataaaacaaTTCGAAATAGTGACTTAAAAGTACATATAAAGGCTCGTCATcctggtgagaagcctcatcaatgtcctcattgtgaataTATATCAGTTCAAGGTAGTCACTTAAAAGTACATATAAAGGCtcgtcatactggtgagaagcttcatcaatgtcctcattgtgaatataaaacaattcGAAATAGTGACTTAAAAGTACATATAAAGGCTCGTCATACTggtgaaaagcctcatcaatgtcctcattgtgaattTAAATCCGTTCAAACTAGTACCTTAAAACAGCATATAATGTCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgattataaaacaaTTCGAAATAGTGACTTAAAAGTACATATAAAGGCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgaatataaatcaGTTCAAGGTAGTCACTTAAAAGTACATATAAAGGCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgattataaaacaattcaaaataGTCACTTAAAAATGCATATAAAGACTCGTCATAATGGTGAGAACCCTCATCAGTGTCAttattgtgaatataaaacCGCACTTAAATCATcattaaaaatgcatataaATGCTTGTCATACTGGTAATAAGCCTCATCAATCTCCTCATTGTGAATTTAAATCCGTTCAAACTAGTACCTTAAAACAGCATATAAAGTCTCGTCATACCgatgagaagcctcatcaatgtcctcagtGTGAATTTAAATCAGTTCAAGCTGGTCACTTAAAAATCCATATAATGTCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgaatataaagcaaTTCGAACTAGTCACTTAAAACTCCATATAATGTCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgattataaaacaaTTCGAAATAGTGACTTAAAAGTACATATAAAGGCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgaataTATATCAGTTCAAGGTAGTCACTTAAAAGAACATATAATGTCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgattataaaacaaTTCGAAATAGTGACTTAAAAGTACATATAAAGGCtcgtcatactggtgagaagcttcatcaatgtcctcattgtgattataaagcAATTCGAACTAGTACCTTAAAACAGCATATAATGTCtcgtcatactggtgagaagtCTCATCACTGCcctcattgtgaatataaaacaattcGAAATAGTGACTTAAAAGTACATATAAAGGCTCGTCATACTggtgaaaagcctcatcaatgtcctcattgtgaattTAAATCCGTTCACACTAGTACCTTAAAACAGCATATAATGTCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgaattTAAATCCGTTCAAACTAGTACCTTAAAACAGCATATAATGTCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgaataTATATCAGTTCAAGGTAGTCAGTTAAAAGTACATATAAAGGCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgattataaaacaaTTCGAAATAGTGACTTAAAAGTACATATAAAGGCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgaatataaatcaGTTCAAGGTAGTCACTTAAAAGTACATATAAAGGCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgaatataaaacaattcGAAATGGTCACTTACAACAGCATATTAAGGCTCAtcatactggtgagaagccTTATCAGTGTCATTATTGTGAACATAAAACCGCACagaaatcaatattaaaatcacATATAATGTCtcgtcatactggtgagaagcctcatcaatgtcatcattgtgaatttaaaacaagtcGAAATAGTCACTTAAAACTACATATAAAGGCtcgtcatactggtgagaagcctcatcaatgtactcattgtgaatataaatcaGTTCAAGGTAGTAACTTAAAACAGCATATAATGTCTCGTCATACTGGTatgaagcctcatcaatgtcctcattgtgattataaaacaattcaaaataGTCACTTAAAAATGCATATAAAGGCtcgtcatactggtgagaagccTTATAAATGTTATCATTGTAACTGTAAAGCAATCGAtcttatagttttaaaatcaCATATAATTGCTCATCATTCAAGTGAGAAGCCTCATTAA
- Protein Sequence
- MWKHIRDAFMKHNRPPKSGDPAPKRKKYVYADALTFLKNSLEKRKTSGNFEDEESIANVRSPEEEGEESVELREGMDSPAVSMLATPCPSPAPSSRRKGGASRMSEFQSILLEKISAPQRQDEDADCKFLLSLHPRMAKLIDPQGLLNETGEKLHQCPHCEFRSVRTSTLKLHTMYRHSGEKPHQCPHCEYKTIQNSDLQLHIKAHHTGENPHQCPHCDYKTIRNSDLKVHIKARHTGEKPHQCPHCEYKSVQGSHLKVHIKARHTGEKPHQCPHCDYKTIQNSHLKMHIKTRHNGENPHQCHYCEYKTALKSSLKMHINACHTGNKPHQSPHCEFKFVQTSTLKQHIKSRHTDEKPHQCPQCEFKSVQAGHLKIHIMSRHTGEKPHQCPHCEYKAIQNSDLQLHIMSRHTGEKPHQCPHCEFKSVRTSHLKLHIMSRHTGEKPHQCPHCDYKTIRNSDLKVHIKARHPGEKPHQCPHCEYISVQGSHLKVHIKARHTGEKLHQCPHCEYKTIRNSDLKVHIKARHTGEKPHQCPHCEFKSVQTSTLKQHIMSRHTGEKPHQCPHCDYKTIRNSDLKVHIKARHTGEKPHQCPHCEYKSVQGSHLKVHIKARHTGEKPHQCPHCDYKTIQNSHLKMHIKTRHNGENPHQCHYCEYKTALKSSLKMHINACHTGNKPHQSPHCEFKSVQTSTLKQHIKSRHTDEKPHQCPQCEFKSVQAGHLKIHIMSRHTGEKPHQCPHCEYKAIRTSHLKLHIMSRHTGEKPHQCPHCDYKTIRNSDLKVHIKARHTGEKPHQCPHCEYISVQGSHLKEHIMSRHTGEKPHQCPHCDYKTIRNSDLKVHIKARHTGEKLHQCPHCDYKAIRTSTLKQHIMSRHTGEKSHHCPHCEYKTIRNSDLKVHIKARHTGEKPHQCPHCEFKSVHTSTLKQHIMSRHTGEKPHQCPHCEFKSVQTSTLKQHIMSRHTGEKPHQCPHCEYISVQGSQLKVHIKARHTGEKPHQCPHCDYKTIRNSDLKVHIKARHTGEKPHQCPHCEYKSVQGSHLKVHIKARHTGEKPHQCPHCEYKTIRNGHLQQHIKAHHTGEKPYQCHYCEHKTAQKSILKSHIMSRHTGEKPHQCHHCEFKTSRNSHLKLHIKARHTGEKPHQCTHCEYKSVQGSNLKQHIMSRHTGMKPHQCPHCDYKTIQNSHLKMHIKARHTGEKPYKCYHCNCKAIDLIVLKSHIIAHHSSEKPH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00165737;
- 90% Identity
- iTF_00165737;
- 80% Identity
- iTF_00165737;