Acus000448.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- -
- Assembly
- GCA_037127475.1
- Location
- CM073759.1:6668978-6669460[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.00041 0.99 11.6 0.1 20 48 10 38 5 41 0.89 2 5 0.00022 0.54 12.5 0.2 18 51 37 70 36 72 0.89 3 5 0.064 1.5e+02 4.6 0.4 22 48 70 96 66 99 0.86 4 5 0.00099 2.4 10.4 0.4 20 51 97 128 94 131 0.88 5 5 0.032 76 5.6 0.1 23 51 129 157 126 159 0.88
Sequence Information
- Coding Sequence
- ATGGAAAGACATGTAATGGCCAGTCATAAAGGTGAGatgcctcatcaatgtcctcactgtgattataaatcagtagaatctggaaatatgaaaagacatgtaatggcccgtcacacaggtgagaagcctcatcaatgtcctcattgcgattataaatcagcagaatctggaaatatgaaaagacATGTAAAGGCCAGTCATACAGAtaagaagcctcatcaatgtcctcattgtgattataaatcagccgTGTCTCAAACTATGAAAAGACATGTAACGGCCCATCACaaaggtgagaagcctcatcaatgtcctcactgtgattataaatcagcacgaTCTGGAGCTATGAAAAAGCATATAATGGTCCGTCATACAGGaaagaagcctcatcaatgccctcactgtgattataaatcaacagaatatggaaatatgaaaaaacatataatagccCGTCATACAGATAAGAAGCCTCATTGA
- Protein Sequence
- MERHVMASHKGEMPHQCPHCDYKSVESGNMKRHVMARHTGEKPHQCPHCDYKSAESGNMKRHVKASHTDKKPHQCPHCDYKSAVSQTMKRHVTAHHKGEKPHQCPHCDYKSARSGAMKKHIMVRHTGKKPHQCPHCDYKSTEYGNMKKHIIARHTDKKPH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00165613; iTF_00165741; iTF_00165616;
- 90% Identity
- iTF_00165613;
- 80% Identity
- iTF_00165613;