Aage004532.1
Basic Information
- Insect
- Aricia agestis
- Gene Symbol
- MBD-R2
- Assembly
- GCA_905147365.1
- Location
- LR990264.1:3421782-3439496[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.7e-15 4.2e-11 42.7 0.0 5 65 783 841 779 850 0.92
Sequence Information
- Coding Sequence
- ATGCGTATAAAAACATGTTGCGTTGAAAAATGTGAATCGTCGGCATCCCGGTCGGAAGATGTAGGTGTAACCTTTCATAAGTTCCCCAAAGACTTCAAGTTACACAGATCATGGCTTGAAGTTACCCACCATACACCTTGTAGCAATGCTCCCTCGTTTGTTTGCTCCAGACACTTTCGAAAAAACGATTTTAAAGTCTATCAGGATTCAAAATATGTACTAAAATCAGATTCTATACCTTCTATATTTACTTGGACACACAAAATGGCAGATACAGAGCAAAAAGACGAAGAATCAAGCAACACACACAATTCTTCTGGTAGTAGTAAGGAGTCAGAAGAAAATATTGACACTATAATGAAGTTCATGGAACAACAGGACAAAGAAAAGGATGAGAAAAATCAAAATAATGTAAAATGTAATGATTCTCAGTCAAAAAATATTTCAAGGGGAGGGGAGGGGAGTGCATCTAAAGATGCAGTGAAAGCCGATGTGAAATCAGCAAGTAGTGTCCTAGATATGTTGATGAGTGAGACAGAAAATAAGATCGAGGCCAAGAAAGAAATAAAGACAACCCCAAAACCGAGCCCTACCTCTGGGGATAAAGGAAGTGTAGCTTTATCGGTGGGGTCTAAGGTAGAAGCCAGAGACTATGCCAATGTATGGAATGCCGCAGAAATATTAGAAGTTGATTGTGATGAAATGGAAGTTTTGGTTCACTATGATAGTCTTGCTAACAAGCCTGATGAGTGGATCAGTGTGAGCAGCTCTAGACTGAGACCATTTAGTGTAAAATCTATTGTCCGACCACAAACTACACCTGTTTCTCACATCGCAGAGAAAATCACCAAAGAAGAAATGCCAGAAGATAAATTAAAACCAACATTTGCTATTGGGGAAAGATGCCTGGCACGGTGGAGGGACAATCGGCGCTTTGTTGCCACTATAAAACAAGTAATGGAGAATGGTTCATATGAAATAGTATTTGATGATGGATTTGCATGGAAATGTTCCACATCAAGATTGTACAAATTGAAGGATACTGGGAAGATATCGGATAATCTGAGTATTGATACATCAGTCCATCCCACTGCGAGTCCGGCACATTCACCGATTTTGGAGGGAGTCGGGCCAAGTACTGGGACGGGAATGACATCAGCTGCCTTACCTCCTTACCATACCCATCTCTTCGACCCAGCTCGCGATTATTTAGGGTCTAAAAAGGAGCGTCGTGAGATGAAACGAAAATTAAATATTAAAGAAATATTTAACATCGGGCAAAAGAAGAAAAAGATGGAAAAACCAGTACAAACTGTAAAACCGGTGAAGCCTGTTACAGAAAAAAAGAAGAGGCCTCACAATCGTAAAAAACAAGACGTATCGAAGAGTGTGCCAGAGGCAGTGGCTTCAATCATTGGTACTGTCGAGCAAAGCGAAGCAGCTGATAAAATTAGTGGCAATAAACTAAACACAATCAATAGTACAGAAAAGGAGAATGAACCAAAGGTCACTGAGAAAATGTCTAAGGATGAAAGTAAAATTGCAATAGTTGATATGCCTGAACAGGATAGTTCTGATCTTTCAGACCCCCAGACCACTGAAAATAATATGTCAATGGAGACAGTCAGTGAAGAAGAAGCTAAACTAGTGAAATTTGATAAACCTGACGAACACAAGCATGAAGAAGTTCTTGATAAGATAAAAGAAGCTATAAACAAACTAGAAGATGGTTTAACGGAAATTAAAAAGGTTGATTCACCAAAGCCCCAATTGAAACTTGAAATTACCAAACTTATTGTCAAAGATCACAATACAAAACCGGAAATTGTAAAAGAAGAGCCAGTTAAGAATGAGGTGGTTAATTCAGAATTACTGGTTAATACAGAGTTAGATATGAAAGAAGAACATGTAGAAAATATAGTCAATACAGAAGAAACGGCGAAAGAAAATAAAGATGAAGTTAAAGCATCAACTTTAAAAGAAGTTGTGAAAGAAGAGTTAAAAACCAAAGAAGATTCAGAAGACAAACCAAAGAAAAAGCTATCGAAGATAAAAAAGAGCAAGAAATTGAGATTGTTACAGGAGAAGAAAGTTAAGAAGCAAGTGGAAAAAGTTAAGAACGAGCTGCAAGATATGAAGAGGCAGATTGAAGAAATGCGACTAGCCATGTTGAAGAAGACGGAGGAGCTAGCGGCCAAGAATCAGGAAATGCCAGAGAGTTTCCTCTTGCCAGGGGAGTGGTGCTGCAAGTGGGTGAACGGGCAACCTGTGGGGACTGTCAGTGAAATGGGAAGTGACACGCCCGTGGATAGTAATAATAAGCCCGGCTTGCCACGACGAAGTGTGCAGGTGGAAGATAAGAGGTTACCAGAAGGATGGACTAAGCACATGGTGAGAAGAAGCCTCGGCCAGTCTGCTGGCAAATGGGATGTGGTGTTAGTTGGCCCTGACAATCGACGGTTTCACACGAAAACTGATATGCGTAATTTTCTGGAAAATCACGGTGAGTCGCTAAAACGGTATGAAAATGCGCTGCTTGACTTCGGAGTACATCTTAAACTGGCCAGACGAATGGGCTGGTATAAGACGACCGGCGAAGAGACGGCGCCGCCCACCGGAATAATTACTAACATGTCACCTCTAGTCAAAAGGAAGAGTATAGTGAAGAAAGATAGGAAAGAAAAGAAGAGGAAATTGAAGATCAAATTCAAAAAATCTAATTCAGCATACAGTATTGCAACAGATAATGATCCTATAGAAAATCTAGCAGAACCAACAGATATGTCACTTTATAACACAGAATTGGAAGATGGCTATGTGTTTGTCGGATCTTTAAAAGTTCAAGTAGTCGATAACTTACTTCGATGTCCTGCGGAAGGTTGTTTCAAAGCGTTCAGAAATAACACTCTCATCAAAATGCATATAAAACATTACCACAGAGACCTCCGGAAAATGCTTGGAGTGACGCCGAAAGTTCTAGATTTGGCCTACGCTCGTTCCAAGTCGGTTAGCAAGGAGCAACAAAAGAAAAGGCAAGTGCCTACACCTAAAATTATCAAAGCCAAGTTGCCGAAGCTTAAGCGGCCCGAGGAACCCAAATTGGAAGTACAGGGTACGCTTTCGCTCGAACCCAAAGATGACAGTCCAAAGGCACCCAGGTTGATCCCTAGATCTCTGGACTCGCCCAAACTACGTCAGAGCCTACAAGGGAACAAGCCAGTCAAACGACCCAAAGTTCTACTCCCCGTTCGAAGACCAGAGCCCGAGGCCGTAGATACAGTAGTCGAGTTTGATGATGTAAAAATTACGTTGCCGGACATACCTCGACAGTTGGACTTCGAAGAGGCCATAACTACACACACGGTGACTAAACCTGCAGATTTGATCAAGGAGAAGCGAACGCCTAAGATGGAGGAAGATGAGTCGTTTGCTGCTTCAGACTTCGACACCCGGTCCAGCTGTCCAGGGTCAGCTACACCGGATTCCAAAATCATGGACAAACCAGCAGAGACCGATCAGTCCATATTTGACAATGTGGAAAATAAGGATGCGAACATGTATATGTATACTGAAACGGGTGAAAGGATCAAGTTGGAGCGTATGAAGCGCGAAGAGATCATAAACTGCCATTGCGGCTTCCGCGAAGAGGACGGGCTCATGGTGCAGTGCGAGCTGTGCCTGTGCTGGCAGCACGCGCTCTGCCACAACATACAACGCGAGGCCGAGGTGCCTGAGAAGTACACGTGCAGCATCTGCCTCAACCCGAAGCGGGGTCGTCGCTCCGCGCGGTTCCTGCACGACCAGGACCGGCTGTACGAGGGTCTGCTGCCGGGCGCGCGGGCGTCGGACAGCCTGCGACGATCTCACGAGCTGTCTGGGAATTTACTGCGAGTTCAGGACGCGCTGCACGCACTACGCGTTAAATACTATGTGGCCACCAAGAAGAACCACCCTAAGTTGTATCTGTGGGCCAAGGACTGGGAGGCGGCGGAGATTTCCATGACACAGGAGCGACTCAACTCTGACTACTCGGACCTCAACATCATCATCAACAACATCGGCAAGGAGAATCTGCCGGTGAAGGATGATATGAGGGACTTGCATCTCGACTTGAGATCCCTTCCGGATGACGATCATAAGGACTCGCTGCTGAGCCTCGCGAATGCGCTGTCTAGCCCCGGCGGAACCTCGCTAGATCTGCCCATAAGTACGTCCGATTTGGAACGCCTGGCTAAGAGTGTACAAGAGCAAGAGAGCCCGCGTCGCATGATAATCCCGCAGCCGGAAGCGGCGATCGACAACGGCGTGTGCCGCGAGCGACTGCTGCGCCACCTCACGCGCTGCCAGGCGCTCATCGACGCGCGACTAGACTCTATAGAGGCGCAGGTCGCGGAGCTGGAATCACAAGACCCATCGTTTGAAGATGATGAAACAGCAGACTACTTCCCCAGGACAAAGCAGACTATACAGATGCTCATGCGAGACCTGGATACCATGGAGGAATTGGGGATTATCACATAG
- Protein Sequence
- MRIKTCCVEKCESSASRSEDVGVTFHKFPKDFKLHRSWLEVTHHTPCSNAPSFVCSRHFRKNDFKVYQDSKYVLKSDSIPSIFTWTHKMADTEQKDEESSNTHNSSGSSKESEENIDTIMKFMEQQDKEKDEKNQNNVKCNDSQSKNISRGGEGSASKDAVKADVKSASSVLDMLMSETENKIEAKKEIKTTPKPSPTSGDKGSVALSVGSKVEARDYANVWNAAEILEVDCDEMEVLVHYDSLANKPDEWISVSSSRLRPFSVKSIVRPQTTPVSHIAEKITKEEMPEDKLKPTFAIGERCLARWRDNRRFVATIKQVMENGSYEIVFDDGFAWKCSTSRLYKLKDTGKISDNLSIDTSVHPTASPAHSPILEGVGPSTGTGMTSAALPPYHTHLFDPARDYLGSKKERREMKRKLNIKEIFNIGQKKKKMEKPVQTVKPVKPVTEKKKRPHNRKKQDVSKSVPEAVASIIGTVEQSEAADKISGNKLNTINSTEKENEPKVTEKMSKDESKIAIVDMPEQDSSDLSDPQTTENNMSMETVSEEEAKLVKFDKPDEHKHEEVLDKIKEAINKLEDGLTEIKKVDSPKPQLKLEITKLIVKDHNTKPEIVKEEPVKNEVVNSELLVNTELDMKEEHVENIVNTEETAKENKDEVKASTLKEVVKEELKTKEDSEDKPKKKLSKIKKSKKLRLLQEKKVKKQVEKVKNELQDMKRQIEEMRLAMLKKTEELAAKNQEMPESFLLPGEWCCKWVNGQPVGTVSEMGSDTPVDSNNKPGLPRRSVQVEDKRLPEGWTKHMVRRSLGQSAGKWDVVLVGPDNRRFHTKTDMRNFLENHGESLKRYENALLDFGVHLKLARRMGWYKTTGEETAPPTGIITNMSPLVKRKSIVKKDRKEKKRKLKIKFKKSNSAYSIATDNDPIENLAEPTDMSLYNTELEDGYVFVGSLKVQVVDNLLRCPAEGCFKAFRNNTLIKMHIKHYHRDLRKMLGVTPKVLDLAYARSKSVSKEQQKKRQVPTPKIIKAKLPKLKRPEEPKLEVQGTLSLEPKDDSPKAPRLIPRSLDSPKLRQSLQGNKPVKRPKVLLPVRRPEPEAVDTVVEFDDVKITLPDIPRQLDFEEAITTHTVTKPADLIKEKRTPKMEEDESFAASDFDTRSSCPGSATPDSKIMDKPAETDQSIFDNVENKDANMYMYTETGERIKLERMKREEIINCHCGFREEDGLMVQCELCLCWQHALCHNIQREAEVPEKYTCSICLNPKRGRRSARFLHDQDRLYEGLLPGARASDSLRRSHELSGNLLRVQDALHALRVKYYVATKKNHPKLYLWAKDWEAAEISMTQERLNSDYSDLNIIINNIGKENLPVKDDMRDLHLDLRSLPDDDHKDSLLSLANALSSPGGTSLDLPISTSDLERLAKSVQEQESPRRMIIPQPEAAIDNGVCRERLLRHLTRCQALIDARLDSIEAQVAELESQDPSFEDDETADYFPRTKQTIQMLMRDLDTMEELGIIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00403828;
- 90% Identity
- iTF_00164442; iTF_00403828; iTF_00403878; iTF_01217563; iTF_01217515;
- 80% Identity
- iTF_00164442;