Abis007757.2
Basic Information
- Insect
- Argynnis bischoffii
- Gene Symbol
- lrrfip2
- Assembly
- GCA_033884665.1
- Location
- CM066616.1:15599435-15617944[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.7e-76 8.3e-72 242.7 24.5 1 264 124 381 124 403 0.91 2 2 2 2.9e+04 -7.6 19.2 1 48 404 450 404 478 0.72
Sequence Information
- Coding Sequence
- atgacgtTAAATATGGGCGAGCGATCCGTGTTGGCCACTCCTGAAAACAGCGACGAGGAGAGTGGAGATGCTTTTACAGATGGTGATTTTGGTGATTCCGAGGAAGAAACTGTGGTAGAGCgtaatttagtaaaaacatCACATATGCCTATCAATGAAAGTGTTAATTCCGAAATTAAAGTGAACAGTGATATTGATTGTACCGATGACAGTTTAGACCAAGCGAATGGTGTTCAGGAATTTGCTGATGAGAAGGAGGAAAATATGCATTTTGGTGACTTTGCTAATTGTGACAGCTCATCGGATTTACGAAGAGATTCGCAAAGTGATGGCTCCATCGTTGGAATACTCGGCGATCAGCATAATCACGCAGAACAACGACTAGCGGCGCGTCGCGCTGCGCGAGCGGAGGCGCGCGAGATCCGCATGCGCGAGCTGGAACGACAGCAGCGCGAGCAAGAGGACCATGCTGATAAGGCGTATGATATGTACGCAGAGACGGTGGGAAGGCGGACAGGCGGTCGGTTAGCCGTGTTGAGTCCTAGCGCGCTACACTCGCCTCGGCGCAGTTCAGAGGATTCTGACGATGTGCTTAGCATCAAGGATCTCAGgCATGAACTAAAAGAAGTGGAGGAGAAGTTCCGTAAAGCCATGATTCTCAACGCCCAGTTGGACAACGACAAAGCGGCGCTCGGCTACCAGCTCGAGTTGCTCAAGGACAGGATAGAGGAGTTGCAGGAGGAGTATGCACAGTTACAGCGCGAACACAAAGAGAAGTGCTCAACACACGAGCGGCTGAAGCGCGAGCACGCGTCGCTGGAGCGCGAGGTGGCGGTGGCGCGCGACGCGGTGCGCGCGCGcgacgcggcggcggcggcggccggCCGCGCCTTCGTGGAGGCGGCGGCGGCGCCCGACGCGCCCGCCGGCGCCGCCTGCGGACAGGTGCCGCCGCTCGCGCTCGTCAGCCACGAGAGCGAGCGCCTGCTCAACGACGCGGGCGAGGGCACGCTGGACGTGCGGCTGGAGCGGCTGGCGGGCGCCAAGGCGGCGCTGGAGAGCGAGGTGCGCAAGCTCAAGCTGCAGCTGCACGAGGAGCGCGCCGCGCGCCACAACGGCGTCGCGCACCTGCACCAGGACGTCGAGGCCGAGCTGGAGGCGCTGCGCAAGTCGGCGTCGGAGGCGaaggcgcgggcggcgcgcgcggaGGCCGAGGCGGCGCTgcaggcggcggcggcggcgcgcctGGAGGCGCAGGTGGCGCGGCTGCGCGCGCGGCAGGACCACCAGGACGAGCACGAGGAGGCGCTCAAGCAGGAGCGCCGCCGGCTGCAGCGGGAGGCGAGAGAAGCGCTAAATCGAGTGGAAGAGTTAGAAACCGAAAATAGCCATCTTACAAAACGTCTGGACAAATTGAAAAATGCCAAGTCCGCGCTATTAAAGGACCTGTGA
- Protein Sequence
- MTLNMGERSVLATPENSDEESGDAFTDGDFGDSEEETVVERNLVKTSHMPINESVNSEIKVNSDIDCTDDSLDQANGVQEFADEKEENMHFGDFANCDSSSDLRRDSQSDGSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRTGGRLAVLSPSALHSPRRSSEDSDDVLSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHKEKCSTHERLKREHASLEREVAVARDAVRARDAAAAAAGRAFVEAAAAPDAPAGAACGQVPPLALVSHESERLLNDAGEGTLDVRLERLAGAKAALESEVRKLKLQLHEERAARHNGVAHLHQDVEAELEALRKSASEAKARAARAEAEAALQAAAAARLEAQVARLRARQDHQDEHEEALKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00723083;
- 90% Identity
- iTF_00723083;
- 80% Identity
- -