Apln018268.1
Basic Information
- Insect
- Arctia plantaginis
- Gene Symbol
- -
- Assembly
- None
- Location
- CADEBC010000958.1:1322815-1331180[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0007 0.043 14.3 2.4 1 23 48 71 48 71 0.96 2 17 1.3 82 4.0 0.0 2 23 144 167 143 167 0.88 3 17 9.3e-06 0.00057 20.2 0.2 3 23 174 195 173 195 0.94 4 17 0.01 0.64 10.6 5.2 2 23 200 222 199 222 0.94 5 17 0.00028 0.017 15.6 5.1 1 23 227 250 227 250 0.96 6 17 1.1e-05 0.00065 20.0 4.0 1 23 254 277 254 277 0.97 7 17 0.00013 0.0082 16.6 0.3 2 23 284 305 283 305 0.96 8 17 0.00025 0.015 15.8 0.4 1 23 362 385 362 385 0.96 9 17 0.0061 0.37 11.4 0.1 2 23 416 438 415 438 0.94 10 17 0.0061 0.38 11.4 2.3 2 23 461 482 461 483 0.95 11 17 0.00047 0.029 14.9 1.7 1 23 488 511 488 511 0.97 12 17 0.029 1.8 9.2 0.2 1 23 516 539 516 539 0.93 13 17 0.00026 0.016 15.7 0.7 2 23 545 567 544 567 0.94 14 17 0.0003 0.019 15.5 0.3 2 23 575 597 574 597 0.97 15 17 0.098 6.1 7.6 0.0 2 23 604 625 603 625 0.95 16 17 1.2e-06 7.4e-05 23.0 0.7 1 23 631 653 631 653 0.94 17 17 2.9e-06 0.00018 21.8 1.3 1 23 659 682 659 682 0.97
Sequence Information
- Coding Sequence
- ATGATTTCACAAGCGGAGCCAGAATCTTTCCTAGAAGATAATATGGAACCGAGAAAGAAGCAAAATATACTACAAATTCGCCAAAATATACAATGTGTATTAAATATGTCGACGGCAGTTCCTTTTAAATTCTTCTCCAAATACTCCTGTTTTTATTGCTCAAAGAAATTCTTTGATTTCGACGATTTACGACAGCATACGAGCGTTGAACATCCAGTATGTGACCTGAAACAGAAGTGCATGAAGAAGTGTAAGGGTGAAAGAATAAACGTTAAGATTGATATCTCAGCTTTAGCGTGCAAAGTGTGTTGTCTTCCAGTTGTAGATTTAGAAGCTTTAATCACGCATTTAATAGATGAACACAAAGCGAACTATGATAAGACAATAACCGGATGCCTTGAACCTTTTCGGATCATCAAAGATAATATACCCTGTCCAATATGTCCCGATAAGGTGTTCCGATACTTCGGGATTCTATTACGTCACGTGAATGCAGAACATAGTAACAATAATAGGATTTGTGACTTCTGCGGCCGAAGTTTCAGGAATGCAGCTAATTTGAATGTTCACATAACATATTCACATACAGGATCGTGTGAGTGTGATGTGTGtggtattaaatacaaaaatcaatGGTGTCTAGCTAGACATAGAGCTAAATGCCACAACGCGAAGGATCATAAATGTCCAAAATGCCCAGAGACTTTTAATTCACAGTATCATAAACAGAAACATCTGATAAAAATGCATGATATAGGCCATAAATGTGATTACTGCGATAAAATGTTCACGAGGAATTCTTTCATGAAGGATCATGTTAGACGAATTCATTTAAAGGAGAAAAACGTACCTTGTTCTATTTGTAACGAGAAATTCTTTGATAACTATCTTTTAAGGATGCATATGGTTAAGCATGAGGGTGATAGGAAGTTCTGTTGTTCCGTATGTGGTTCAAAATTCGATACAGTGGAGGACAAAAGTAAGAAAATGGAAGTTGCCAGAAAGCTCTTGATTAAGAGACGTAATGTCGAATATGTATTACAGTATAGCAATGTGACTCCTTTTATGTGGCATAAGGGCAagtacaaatgtttttattgcaaCGAAACAACCAAAGACCCAGGCCTGCTAAGAGAACACACTGCAAAAATTCACCAATTTGCAAATCTAGAACTAGCAGTTTTTGACAGAACaaagaataacagaaataaagatGCTGCAGTTAAAATCGATGTTACTGGAATATCTTGTAAGCTTTGTCCTCAAGCTGTAACGAATTTAGAAGAACTTATACATCATTTGATTATCGCACACGATGCGGAATATGATGTCAGCGTTCCAAATTGCTTGCTACCCTTCAAATTAGACAAAGACCAACCTACTTGTCCCACATGTAATATGAAATTTGTTTTCTTCGAATATTTGCTTAGACATGCTAACAAGCATCACTTATCACATCACTATATTTGTGATGTATGCGGCACCAGTTTCCAAGGagaaaaccatttaaaaatgcATTACAGGTACTATCATAGAGAAGGAGGCTATACCTGCGACTATTGTGGTATAAGTCTTGCGACATTATCAAAGAAAATTCTCCACGAGAAGAACGTGCATTTGGTGAATCTTTCAACTTGCCCTCATTGTCCGGAAACCTTTAAAAGTCCGTACCTAAAGAAACTGCACATGGCAAATGTTCATGGCGTAGAGGAACTTAAAATTAAGTGTCCTTATTGCTCAAAAGTGTATCCGCAAGAGTCCATAATGTCGAGACACATGCGACGAGTGCACTTGAGAGAGAAGAACGTTGAATGCGAAGTTTGTGGCGACAAATTCTTCGGACCGTACGATGTAAAGTTGCACATGGTCAAACATAACGGAGACAAGAAATTTGTTTGCTCTGTGTGCGGCAAGAAGTTCTCTAAGCGAAGTAATTTAAATTCTCATGTGGTATTACACACCCGGGACAAAGATTACATATGTGGGATTTGTACTAAAGCTTTCGCTCACCAAACAAATCTCAAAATGCACATTAGAAACAGACATTCAGATATTCCGTTTGATGAAACCAGAATGGTTGATGAAATTGATGAAAGTGAAATGGTTCAAATGGAAATAATCAAAGATGACTTGGAAGGTGAAGTAGCTGGACAGTATATTCAATGA
- Protein Sequence
- MISQAEPESFLEDNMEPRKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFFDFDDLRQHTSVEHPVCDLKQKCMKKCKGERINVKIDISALACKVCCLPVVDLEALITHLIDEHKANYDKTITGCLEPFRIIKDNIPCPICPDKVFRYFGILLRHVNAEHSNNNRICDFCGRSFRNAANLNVHITYSHTGSCECDVCGIKYKNQWCLARHRAKCHNAKDHKCPKCPETFNSQYHKQKHLIKMHDIGHKCDYCDKMFTRNSFMKDHVRRIHLKEKNVPCSICNEKFFDNYLLRMHMVKHEGDRKFCCSVCGSKFDTVEDKSKKMEVARKLLIKRRNVEYVLQYSNVTPFMWHKGKYKCFYCNETTKDPGLLREHTAKIHQFANLELAVFDRTKNNRNKDAAVKIDVTGISCKLCPQAVTNLEELIHHLIIAHDAEYDVSVPNCLLPFKLDKDQPTCPTCNMKFVFFEYLLRHANKHHLSHHYICDVCGTSFQGENHLKMHYRYYHREGGYTCDYCGISLATLSKKILHEKNVHLVNLSTCPHCPETFKSPYLKKLHMANVHGVEELKIKCPYCSKVYPQESIMSRHMRRVHLREKNVECEVCGDKFFGPYDVKLHMVKHNGDKKFVCSVCGKKFSKRSNLNSHVVLHTRDKDYICGICTKAFAHQTNLKMHIRNRHSDIPFDETRMVDEIDESEMVQMEIIKDDLEGEVAGQYIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00637956; iTF_00709516;
- 90% Identity
- iTF_00637956;
- 80% Identity
- -