Egri039309.1
Basic Information
- Insect
- Eilema griseolum
- Gene Symbol
- -
- Assembly
- GCA_963662185.1
- Location
- OY759253.1:19034722-19040388[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.2e-05 0.0015 20.3 3.0 1 23 48 71 48 71 0.98 2 18 1.7 2.3e+02 4.0 0.0 2 23 144 167 143 167 0.88 3 18 1.2e-05 0.0016 20.2 0.2 3 23 174 195 173 195 0.94 4 18 0.0022 0.29 13.1 2.8 2 23 200 222 199 222 0.94 5 18 0.00047 0.061 15.2 5.5 1 23 227 250 227 250 0.96 6 18 2.6e-05 0.0033 19.2 4.8 1 23 254 277 254 277 0.97 7 18 0.00017 0.023 16.6 0.3 2 23 284 305 283 305 0.96 8 18 0.2 26 7.0 0.2 1 10 311 320 311 325 0.85 9 18 0.00066 0.085 14.8 0.8 1 23 369 392 369 392 0.94 10 18 0.0079 1 11.4 0.1 2 23 423 445 422 445 0.94 11 18 0.008 1 11.4 2.3 2 23 468 489 468 490 0.95 12 18 0.00061 0.079 14.9 1.7 1 23 495 518 495 518 0.97 13 18 0.037 4.8 9.2 0.2 1 23 523 546 523 546 0.93 14 18 0.0012 0.16 13.9 0.7 2 23 552 574 551 574 0.93 15 18 0.00018 0.023 16.5 0.1 2 23 582 604 581 604 0.97 16 18 0.13 17 7.5 0.0 2 23 611 632 610 632 0.95 17 18 2.8e-06 0.00036 22.2 0.7 1 23 638 660 638 660 0.93 18 18 5.2e-05 0.0067 18.2 1.5 1 23 666 689 666 689 0.96
Sequence Information
- Coding Sequence
- ATGATTTCACAAGCCGAACCAGAATCTTTCTTAGAAGACAATTTAGAACCACGAaagaaacaaaacattctaCAAATTCGTCAAAATATACAATGTGTTTTAAATATGTCGACAGCAGTCCCTTTCAAATTCTTTTCGAAGTATTCCTGCTTTTACTGCTCGAAGAAGTTCTCTGATTTCGACGACTTACGACAGCATACAAGAACTGAACATCCTATATGCGATTTGAAACAGAAATGTATGAAAAAGTGCAAAGGCGAAAGAATTAATGTTAAGATTGATATTTCAGTATTAGCCTGTAAAGTCTGCTGTCTTCCAATGCAAGATTTAGAAACTTTAATCACCCATTTAGTAGAAGTACACAAAGCGAATTATGACAAATCTATTATTGGATGTCTTGAGCCCTTTAGAATTATCAAAGATAATATACCCTGTCCTATATGCCCAGATAAGGTGTTCCGTTACTTCGGGATCTTATTACGTCATGTTAATGCAGAGCATAGCAATAATAACAGAATTTGTGACTTCTGCGGTCGAAGTTTTCGAAACGCAGCTAACTTAAACGTACATATAACGTATTCTCATACTGGCTCCTGTGAATGCGATGTCTGTGGTATCAAATATAAGAACCAATGGTGCTTAGCTCGACATAGGGCTAAATCCCATAACGCGAAAGACCACAAATGTCCGAAATGTCCAGAGACTTTTAATTCACAGTATCATAAACAAAAGCATTTAATTAAAACCCATAATATTGGACATAAGTGTGATTATTGTGACAAAATGTTCACAAGAAATTCTTTCATGAAGGATCACGTTAGACGAACTCATTTGAAGGAGAAAAATGTCCCTTGTTCTATTTGCAACGAGAAATTCTTTGATAACTACCTTTTAAGGATGCATATGGTGAAGCATGAAGGTGATAGGAAGTTTAGCTGTACTGTCTGTGGCAAAGCATTCTTGAGGCGAAGTTCAAAATTCGATACAATGGAGGACAAAAGTAAGAAAATGGAAGTCGCCAGAAAATTGTTGATAAAACGACGCAATGTCGAATATGTGTTACAATATAGCAATGTGACTCCATTTATGTGGCATAAGGGCAAGTACAAATGCTTTTACTGCAACGAAACAACTAAAGATCCCGAATTGCTTAGAGAACATACCACAAACGTTCACCAATTTGCTAATCTAGAACTCGTAGTTTTCGACAGAACAAAAAACAATAGAAACAAGGATGCTGCGGTTAAGATTGATGTCACTGGAATATCTTGTAAGCTTTGTCCTCAAGCTGTAACGAATTTAGAAGAACTGATACATCATTTAATCATCGCACATGACGCGGAGTATGACGTCAGCGTTCCGAATTGCTTACTACCCTTCAAACTGGACAAAGATCAACCTACATGTCCCACGTGCAATATGAAATTTGTTTTCTTCGAATACTTGCTCAGACATGCTAATAAGCATCACTTATCTCATCACTATATATGCGATGTGTGTGGTACTAGTTTCCAAGGAGAAAACCACCTCAAAATGCATTACAGATACTATCATAGAGAAGGGGGATACACCTGCGAATACTGTGGCATTAGTCTCGCGACATTGTCGAAGAAAATTCTTCACGAGAAAAACGTGCACTTGGTTAATCTTTCGACTTGCCCTCACTGTCCAGAAACTTTCAAAAGTCCGTATCTCAAAAAACTACACCTAGCAAATGTTCACAGCGTAGAGGAGCTTAAAATAAAGTGTCCTTATTGTCCAAAAGTGTATCCCCAAGAGTCTATAATGTCAAGGCACATGCGGAGAGTGCACTTGAGAGAAAAAAATGTGGAATGCGAAGTCTGTGGCGATAAATTTTTCGGGCCTTACGATGTTAAACTGCACATGGTCAAACATAACGGAGATAAGAAATTTATTTGTTCCGTGTGCGGTAAGAAGTTCTCTAAGCGTAGTAATTTGAACTCCCACGTAGTATTACACTCCAAAGAGAAAGATTTTGTATGCGTTTTTTGCAATAAAGGGTTTGCTCACCAGGCTAATCTTAAAATGCATGTTAGGAATAGACACAATCAGTTTGATGAACCTAGAATGGAGGACGAAATTGAAGATAGTGAAATGGTTAAAATGGATATCATCAGAGATGATTTGGAAGGGGAAGTTGCGGGACAATATATTCAATGA
- Protein Sequence
- MISQAEPESFLEDNLEPRKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFSDFDDLRQHTRTEHPICDLKQKCMKKCKGERINVKIDISVLACKVCCLPMQDLETLITHLVEVHKANYDKSIIGCLEPFRIIKDNIPCPICPDKVFRYFGILLRHVNAEHSNNNRICDFCGRSFRNAANLNVHITYSHTGSCECDVCGIKYKNQWCLARHRAKSHNAKDHKCPKCPETFNSQYHKQKHLIKTHNIGHKCDYCDKMFTRNSFMKDHVRRTHLKEKNVPCSICNEKFFDNYLLRMHMVKHEGDRKFSCTVCGKAFLRRSSKFDTMEDKSKKMEVARKLLIKRRNVEYVLQYSNVTPFMWHKGKYKCFYCNETTKDPELLREHTTNVHQFANLELVVFDRTKNNRNKDAAVKIDVTGISCKLCPQAVTNLEELIHHLIIAHDAEYDVSVPNCLLPFKLDKDQPTCPTCNMKFVFFEYLLRHANKHHLSHHYICDVCGTSFQGENHLKMHYRYYHREGGYTCEYCGISLATLSKKILHEKNVHLVNLSTCPHCPETFKSPYLKKLHLANVHSVEELKIKCPYCPKVYPQESIMSRHMRRVHLREKNVECEVCGDKFFGPYDVKLHMVKHNGDKKFICSVCGKKFSKRSNLNSHVVLHSKEKDFVCVFCNKGFAHQANLKMHVRNRHNQFDEPRMEDEIEDSEMVKMDIIRDDLEGEVAGQYIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00157408;
- 90% Identity
- iTF_00157408;
- 80% Identity
- -