Axyl001343.1
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- -
- Assembly
- GCA_947563465.1
- Location
- OX387370.1:8262913-8269199[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.00016 2.5 9.1 0.8 1 53 149 201 149 202 0.91 2 5 0.00017 2.6 9.0 0.5 21 45 197 221 193 224 0.90 3 5 0.00044 6.9 7.6 0.2 21 44 225 248 221 252 0.91 4 5 0.0013 20 6.2 0.1 21 52 253 284 249 286 0.88 5 5 0.0014 23 6.0 0.0 21 45 281 305 279 310 0.89
Sequence Information
- Coding Sequence
- ATGTCGCTGGAGGCAGAGCAAGCAGGGTACCCAGCGCGCAGGGAGTTGCAGCCAGGCGCTGTGCTCGCAAATCGAGCCGGAAAAGTCAACAGCAACGCTCCACTGCTGGAGGTAGTGTGTGTCAAGACAGAGACAGACTGCGTAAGAGCAGTACGTGTGAAAGAAGAACCTGCTTGGGAAGCAGAGAGTGTTACAGATGCACATGTAAAAAAAGAGATATGTGTAAATAAGATAGCTTGTGGAAATAAGACATATGTGGAGGTAGAAGTAGAGGCAATGGTAGTGAAAGAGGAAGTGGAAACAGAGCAAAGTGCAGATGAGTTGTGTGTGGGTGATGAAGTCAAGGAGTTAGCACTGGGACCTGAGAAACTGCAGCCTCACAATACAACTTCCGCAGTACATGCATCTGGCAGCAAAGATGTGACGCTGAAGCGAAAACTACGGCCACGTCGCAAAACCACCAAAACACCCAGACAAAAAAACAAAACCAAGAGAATCTACAAAGGCGACCAACTATATAAATGTGACATGTGTGACACATCGTGCCGACAAAAATCTGATCTTGTAAAACATATTAGAATCCACACAGGGGAGAAACCTCATGTGTGTGAAATTTGTCACACGCCTTTCAGACAGAAATGTGACCTGGTGAAACATGTCCGAATTCACACAGGCGAGAAACCGTATACGTGTGGGACTTGTGAAATGCGGTTCCGGCAGCAATCTGGTTTGATAAGGCATATACGAACTCACACGGGTGAGCGACCATATCCATGCGAGACCTGTAAAAAGACCTTCAGGCAACAATCGGGTTTGATGAAGCATATCAAAATACACACAGGCGAGAAACCATATGTGTGCGATGTATGTAAAATGCCATTCAGACAGAAATCGGGCTTGCTGAGACATAAGAAAATACACACAGCTTTGTTCGGGGAAACAGAGGGTATGTGGGGTTCTCCCACAAGGGGCGTACCCACTGAAAACCACACGGATTCCCTCGTTGCCATTGTGAACGCCGCGGGAGTATGTAGTGGCACCGCTACGCCCATTGGCCGCCTCGGGATGAGGCTCCTCTGa
- Protein Sequence
- MSLEAEQAGYPARRELQPGAVLANRAGKVNSNAPLLEVVCVKTETDCVRAVRVKEEPAWEAESVTDAHVKKEICVNKIACGNKTYVEVEVEAMVVKEEVETEQSADELCVGDEVKELALGPEKLQPHNTTSAVHASGSKDVTLKRKLRPRRKTTKTPRQKNKTKRIYKGDQLYKCDMCDTSCRQKSDLVKHIRIHTGEKPHVCEICHTPFRQKCDLVKHVRIHTGEKPYTCGTCEMRFRQQSGLIRHIRTHTGERPYPCETCKKTFRQQSGLMKHIKIHTGEKPYVCDVCKMPFRQKSGLLRHKKIHTALFGETEGMWGSPTRGVPTENHTDSLVAIVNAAGVCSGTATPIGRLGMRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00156562; iTF_00155548; iTF_00155906;
- 90% Identity
- iTF_00156562;
- 80% Identity
- iTF_00156562;