Acra000923.1
Basic Information
- Insect
- Archips crataeganus
- Gene Symbol
- -
- Assembly
- GCA_947859365.1
- Location
- OX402073.1:7359329-7373217[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0025 35 5.2 0.8 1 52 149 200 149 201 0.85 2 7 0.0015 21 5.9 0.1 21 53 197 229 193 230 0.87 3 7 0.00015 2.1 9.1 0.3 21 46 225 250 223 253 0.91 4 7 0.00054 7.5 7.4 0.1 21 44 253 276 251 280 0.91 5 7 0.0015 20 6.0 0.1 21 52 281 312 277 314 0.88 6 7 0.00055 7.6 7.4 0.0 21 52 309 340 307 342 0.87 7 7 0.014 1.9e+02 2.9 0.0 21 43 337 359 335 364 0.87
Sequence Information
- Coding Sequence
- ATGCCGCTGGAGGCAGAGCAAGCAGGGCTCCCAGCGCGCAGGGAGTTGCAGCCAGGCGCAGTGCTCACAAATCGAGCTAGAAAAGTCAACAGCAACGCTCCACTGCTGGAGGTAGCGTGTGTCAAGACAGAGACAGACTGTGTAAGAGCAGTATGTGTGAAAGAAGAACCTGCTTGGGAAGCGGAGAGTGTTTCAGATGCACATGTAAAAAAAGAGATATGTGTAAATAAGATAGCTTGTGGAAATAAGATATATGTGGAGGTAGAAGTAGAGGCAATGTTAGTGAAAGAGGAAGTGGAAACAGAGCAAAGTGCAGATGAGTTGTGTGTGGGTGATGCAGTTAAGGAGTTTGCGCTGGGACCCGAGAAACTGCAGCCTCACAATACAACTTCCGCAGTACATGCATCTGGCAACAAAGATGTGACGCTGGGGCGAAAACTACGGCCACGTCGCAAAACCACCAAAACACCCAGACAAAAAAACAAAACCAAGAGAATCTACAAAGGCGACAAACTATATAAATGTGACATGTGTGACACATCGTGCCGACAAAAATCTGATCTTGTAAAACATATAAGAATCCACACAGGTGAGAAACCGCATGCGTGTGACATCTGTAAAACACCGTTCAGGATAAAATCTGACCTTCTAAAACATATCATGATTCACACAGGGGAGAAACCTCATGTGTGTGAAATTTGTCACACGCCTTTCAGACAGAAATGTGACCTGGTGAAACATATCCGAATTCACACAGGCGAGAAACCGTATACGTGTGGGACTTGTGAAATGCGGTTCCGGCAGCAATCTGGTTTGATAAGGCATATACGAACTCACACGGGTGAGCGGCCATATCCATGCGAGACCTGTAAAAAGACCTTCAGGCAACAATCGGGTTTGATGAAGCATATCAAAATACACACAGGCGAGAAACCATATGTGTGCGATGTGTGTAAAATGCCGTTCAGACAGAAATCGGGCTTGCTGAGGCACAAGAAAATACACACAGGTGAGAAACCGTATGTGTGTGACGTTTGTCAGAGCGCGTTCAGGGAGAATTCGGGCTTAATAAAGCACAGCAGGATTCACACAGGAGAACGAGAAGATTCGAGGAGAATTGCTGTGTGGGAGCGCTGCTGGGACAGTAACCTGTCGGCTCCAACCACGGGGAACTGGGCTGAATGA
- Protein Sequence
- MPLEAEQAGLPARRELQPGAVLTNRARKVNSNAPLLEVACVKTETDCVRAVCVKEEPAWEAESVSDAHVKKEICVNKIACGNKIYVEVEVEAMLVKEEVETEQSADELCVGDAVKEFALGPEKLQPHNTTSAVHASGNKDVTLGRKLRPRRKTTKTPRQKNKTKRIYKGDKLYKCDMCDTSCRQKSDLVKHIRIHTGEKPHACDICKTPFRIKSDLLKHIMIHTGEKPHVCEICHTPFRQKCDLVKHIRIHTGEKPYTCGTCEMRFRQQSGLIRHIRTHTGERPYPCETCKKTFRQQSGLMKHIKIHTGEKPYVCDVCKMPFRQKSGLLRHKKIHTGEKPYVCDVCQSAFRENSGLIKHSRIHTGEREDSRRIAVWERCWDSNLSAPTTGNWAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00156860;
- 90% Identity
- iTF_00155548;
- 80% Identity
- iTF_00155548;