Basic Information

Insect: Archips xylosteana
Gene Symbol: -
Assembly: GCA_947563465.1
Location: OX387343.1:47291511-47318606[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0018 0.13 13.6 6.1 1 23 176 198 176 198 0.99

2 11 1.5e-05 0.0011 20.1 0.7 1 23 204 226 204 226 0.99

3 11 8.7e-05 0.0063 17.7 1.6 1 23 232 255 232 255 0.96

4 11 0.039 2.9 9.3 3.3 1 21 261 281 261 283 0.95

5 11 4.4e-05 0.0032 18.6 0.8 1 23 289 311 289 311 0.99

6 11 0.0001 0.0073 17.5 3.3 1 23 317 339 317 339 0.98

7 11 0.00083 0.061 14.6 1.1 1 23 347 370 347 370 0.98

8 11 0.015 1.1 10.7 4.9 2 23 377 398 376 398 0.96

9 11 0.0013 0.093 14.0 2.1 1 23 404 426 404 426 0.98

10 11 2e-06 0.00015 22.8 1.9 1 23 432 455 432 455 0.96

11 11 1.3e-05 0.00093 20.3 3.8 1 23 469 491 469 491 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0018	0.13	13.6	6.1	1	23	176	198	176	198	0.99
2	11	1.5e-05	0.0011	20.1	0.7	1	23	204	226	204	226	0.99
3	11	8.7e-05	0.0063	17.7	1.6	1	23	232	255	232	255	0.96
4	11	0.039	2.9	9.3	3.3	1	21	261	281	261	283	0.95
5	11	4.4e-05	0.0032	18.6	0.8	1	23	289	311	289	311	0.99
6	11	0.0001	0.0073	17.5	3.3	1	23	317	339	317	339	0.98
7	11	0.00083	0.061	14.6	1.1	1	23	347	370	347	370	0.98
8	11	0.015	1.1	10.7	4.9	2	23	377	398	376	398	0.96
9	11	0.0013	0.093	14.0	2.1	1	23	404	426	404	426	0.98
10	11	2e-06	0.00015	22.8	1.9	1	23	432	455	432	455	0.96
11	11	1.3e-05	0.00093	20.3	3.8	1	23	469	491	469	491	0.95

Sequence Information

Coding Sequence: ATGCCGCCTCCCGACAAGAAGGGGGTGGGTGTCAATGACGGAAAGATCCTCCAGTCTTACCTCAACGCGTACAACCAGCAGCAGACTGAGACTGAAGCCACTGTATTGGTGAACAGTGCCGAGGAAGAGGAGAACCCCAATGGAGTCACGTATTTCGTAGATGAGCAGGGGCGGTACTACTACCAGCCTGGCGAGAACCAGACCATAGTGTCCCTCTCCAACCCAGAAGAAAATGAGGAGGCTATCGCTGAAGACGATAATACAATGATCGAGGAAGGCTACCAGACAGTCACGCTGGTTCCTTCGGACACGGGGACCGGAGAAGTGAGCTATGTCCTCGTTGTGCAAGAAGAAACCAAGCCAGTCATCAATGTCGACATCAAGATTGATCAGGAGGAAGAAGAAGACAAAGGCAATGACGACGTATACACCTTTGAGGAGGAGGGCATCGAGGAGGTTTCCGAGGACGAGGAGGAGGTCTCGAAGCGCAAGAAGACGCCGAAGAGGAGGAACCAGCGCTCCAAGTTCACATGCTCCTTCTGCAACTATACTAGCCATAGGCGCTACCTCCTACTGAGGCACATGAAAACCCACTCGGAGGATCGCCCGTACAAGTGCAAGGTCTGCGAGCGAGGGTTCAAGACCATGGCTTCTCTGCAGAACCACGTGAACATGCACAACGGGGTCAAACCCCACGTCTGCAAGTACTGCAACAGCCCCTTCACTACTTCTGGCGAGCTCGTGCGGCACGTACGCTACCGTCACACGCACGAGAAGCCCCACAAGTGCACGGAGTGCGACTACGCCTCCGTCGAGTTGTCCAAGCTGCGACGGCACGTGCGGTGCCACACCGGCGAGCGGCCATATCAGTGCCCGGACTGCACGTACGCGTCGCCGGACACGTTCAAGCTGAAGCGGCACCTCCGGACGCACACGGGCGAGAAGCCATACAAGTGCGACAGTTGCAACATGTGCTTCACTCAGTCCAACTCGCTGAAGGCGCACAAACTCATACACAACGTTGCCGAGAAACCGGTGTACCGTTGCGAGCTGTGCCCGGCCAAGTGCGGCCGTAAGACCGATCTGCGCATACACATACAGAAGCTTCACACGTCGGACACGCCGCTGAAGTGCAAGCGGTGCGGCAAGTCATTCCCCGACCGCTACTCGTGCAAACTGCACAACAAGACGCACGAGGGCGAGAAGTGTTTCAAGTGCGACTTGTGCCCGTACGCGTCCACGATGTTGCGGCACCTCAAGTCGCACATGCTCAAGCACACAGACGAGAAGCCGTTCGTGTGCACCGAGTGCGACCAGAGCTTCCGCCAGAAGCAATTGCTGCGTCGGCATCAGAACCTTTACCACAACCCCGACTATGTCCCGAAGCCGCCAAAAGAGAAGACTCACGCGTGCCACGAGTGCAAGCGCACTTTCGCCCACAAGGGCAACCTCATCCGCCACCTGGCCGTCCACGACCCGGAGTCGGGGCACACCGAGCGCGCGCTCGCGCTCAAGATCGGCCGCCAGCGCAAGATCAAGTATATGACGTCGAGGAAGCAGGACTCGCCCGCGGAGTCCGACGACATGGTCAAGCTCGGTCTGACCAACAACGAGCTGCGGCGCGGCGAGCTGGTGACCGTGGCCGACGGGGACGGGCAGCAGTACGTCGTGCTGGAGGTCATCCAACTGGAGGACGGCACCGAGCAACACGTGGCCGTCGTCGCGCCCGACTACATGGAGTGCGAGGATGAGAACGGCAAGTATAAAGAAGATGATGAAGAGGAGGAAGAGGAAGAGCGCGATACTGCGCCGGCGGAGGTGCGCGTCAAGGACACCATTCTGGAGAAGAGCATCAAGCTCGAGAAGGATGTCAACTCCTGCTTCGGCTTTGACTTGGTTTTGTGCGCAGCTTTGCGAACATTCCTAATGGGCCAGTTAGATAAACTAATGGAGATAGGCAAATGTCTCAATGAGGCCGCGGACACCAAGTCGGCGGACGGCGGAGCGGCGCGTTCAAGTGAATAG
Protein Sequence: MPPPDKKGVGVNDGKILQSYLNAYNQQQTETEATVLVNSAEEEENPNGVTYFVDEQGRYYYQPGENQTIVSLSNPEENEEAIAEDDNTMIEEGYQTVTLVPSDTGTGEVSYVLVVQEETKPVINVDIKIDQEEEEDKGNDDVYTFEEEGIEEVSEDEEEVSKRKKTPKRRNQRSKFTCSFCNYTSHRRYLLLRHMKTHSEDRPYKCKVCERGFKTMASLQNHVNMHNGVKPHVCKYCNSPFTTSGELVRHVRYRHTHEKPHKCTECDYASVELSKLRRHVRCHTGERPYQCPDCTYASPDTFKLKRHLRTHTGEKPYKCDSCNMCFTQSNSLKAHKLIHNVAEKPVYRCELCPAKCGRKTDLRIHIQKLHTSDTPLKCKRCGKSFPDRYSCKLHNKTHEGEKCFKCDLCPYASTMLRHLKSHMLKHTDEKPFVCTECDQSFRQKQLLRRHQNLYHNPDYVPKPPKEKTHACHECKRTFAHKGNLIRHLAVHDPESGHTERALALKIGRQRKIKYMTSRKQDSPAESDDMVKLGLTNNELRRGELVTVADGDGQQYVVLEVIQLEDGTEQHVAVVAPDYMECEDENGKYKEDDEEEEEEERDTAPAEVRVKDTILEKSIKLEKDVNSCFGFDLVLCAALRTFLMGQLDKLMEIGKCLNEAADTKSADGGAARSSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00654560;
90% Identity: iTF_00342465; iTF_00155559; iTF_01136039; iTF_01135056; iTF_00462649; iTF_00325690; iTF_00021563;
80% Identity: -