Phep000197.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pandemis heparana
Gene Symbol
-
Assembly
GCA_963854515.1
Location
OY978006.1:2902655-2922952[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0016 0.11 13.8 6.1 1 23 116 138 116 138 0.99
2 11 1.4e-05 0.0009 20.3 0.7 1 23 144 166 144 166 0.99
3 11 1.1e-05 0.00071 20.6 1.7 1 23 172 195 172 195 0.96
4 11 0.036 2.4 9.5 3.3 1 21 201 221 201 223 0.95
5 11 4e-05 0.0026 18.8 0.8 1 23 229 251 229 251 0.99
6 11 9e-05 0.006 17.7 3.3 1 23 257 279 257 279 0.98
7 11 0.00076 0.05 14.8 1.1 1 23 287 310 287 310 0.98
8 11 0.013 0.88 10.9 4.9 2 23 317 338 316 338 0.96
9 11 0.0012 0.077 14.2 2.1 1 23 344 366 344 366 0.98
10 11 1.8e-06 0.00012 23.0 1.9 1 23 372 395 372 395 0.96
11 11 1.2e-05 0.00076 20.5 3.8 1 23 409 431 409 431 0.95

Sequence Information

Coding Sequence
ATGTACAAGTGTTTTTTACTTAACTGCCTTCGTATTATTATCTGTTTACTAGCGTATGAGGCAATAGCAGAAGATGATAATACAATGATCGAGGAAGGTTACCAGACAGTAACGTTGGTGCCTTCGGATACGGGCACCGGGGAAGTGAGCTACGTTCTGGTGGTGCAGGAGGAGACCAAGCCGGTCATCAATGTAGACATCAAGATTGATCAGGAGGAGGAAGAAGACAAAGGCAATGACGACGTGTACAACTTTGAGGAGGAGGGCATCGAGGAGGTATCCGAGGAGGAGGAGGAAGTCACGAAGCGCAAGAAGACACCCAAGAGGAGGAACCAGCGCTCCAAGTTTACCTGCTCTTTCTGCAACTACACAAGCCATAGACGCTACCTCCTTCTGAGACACATGAAGACACATTCGGAGGACCGTCCGTACAAGTGCAAGGTGTGCGAGCGGGGGTTCAAGACCATGGCCTCTCTGCAGAACCATGTCAACATGCACAACGGTGTCAAACCTCACGTCTGCAAGTACTGCAACACCCCGTTCACAACGTCCGgcGAGCTGGTCCGGCACGTGCGTTACCGGCACACGCACGAGAAGCCCCACAAGTGCACCGAGTGCGACTACGCCTCGGTGGAGCTGTCCAAGCTGCGCCGGCACGTGCGATGCCACACAGGGGAGCGCCCCTACCAGTGCCCGGACTGCACGTACGCGTCCCCGGACACGTTCAAGCTGAAGCGGCACCTGCGCACGCATACCGGCGAGAAGCCGTACAAGTGCGACAGCTGCAACATGTGCTTCACGCAGTCCAACTCGCTGAAGGCGCACAAACTCATACACAacgTGGCCGAGAAGCCGGTGTACCGGTGCGAGCTCTGCCCCGCCAAGTGCGGCCGCAAGACGGACCTGCGCATACACATACAGAAGTTGCACACGTCGGACACTCCGCTCAAGTGCAAGCGCTGCGGGAAGTCCTTCCCCGACCGCTACTCCTGTAAACTGCATAATAAgACGCACGAAGGCGAGAAGTGTTTCAAGTGCGACCTGTGCCCGTACGCGTCGACGATGTTGCGGCACCTAAAGTCGCACATGCTCAAGCATACAGACGAGAAGCCGTTCGTGTGCACCGAGTGCGATCAGAGCTTCCGCCAGAAGCAGCTGCTGCGCCGGCATCAGAACCTGTACCACAACCCGGACTACGTGCCCAAGCCGCCCAAGGAGAAGACCCACGCGTGCCACGAGTGCAAGCGCACGTTCGCACACAAGGGCAATTTGATCCGTCACCTGGCTGTTCACGATCCGGACTCTGGTCACACCGAGCGCGCGCTCGCTCTCAAGATAGGACGCCAGCGCAAGATCAAGTACATGACGTCCAGGAATCAGGAGGAGCCCAACGAGTCGGACGACGCCGGCATGGTCAAGCTCGGCCTGACCAACAACGAGCTGCGCCGCGGCGAGCTGGTGACCGTGGCCGACGGCGACGGCCAGCAGTACGTGGTTCTCGAGGTGATACAGCTCGAGGACGGCACCGAGCAGCACGTGGCGGTAGTCGCGCCAGACTACATGGAGTGCGAGGATGAGAACGCGGAAGAGGAAGAGGaagaggaggaggaggaggaacGCGAGTCTGCGCAGACGGAGGTGCGCGTCAAGGACACCGTGCTGGAGAAGAGCATCAAACTCGAGAAGGATGTTAACTCCTGCTTCGGATTTGACGATGAAGAGGAAGGCGAAAATGACGAGGACTACGAAATGCTGGAGGCTCGCACCTAG
Protein Sequence
MYKCFLLNCLRIIICLLAYEAIAEDDNTMIEEGYQTVTLVPSDTGTGEVSYVLVVQEETKPVINVDIKIDQEEEEDKGNDDVYNFEEEGIEEVSEEEEEVTKRKKTPKRRNQRSKFTCSFCNYTSHRRYLLLRHMKTHSEDRPYKCKVCERGFKTMASLQNHVNMHNGVKPHVCKYCNTPFTTSGELVRHVRYRHTHEKPHKCTECDYASVELSKLRRHVRCHTGERPYQCPDCTYASPDTFKLKRHLRTHTGEKPYKCDSCNMCFTQSNSLKAHKLIHNVAEKPVYRCELCPAKCGRKTDLRIHIQKLHTSDTPLKCKRCGKSFPDRYSCKLHNKTHEGEKCFKCDLCPYASTMLRHLKSHMLKHTDEKPFVCTECDQSFRQKQLLRRHQNLYHNPDYVPKPPKEKTHACHECKRTFAHKGNLIRHLAVHDPDSGHTERALALKIGRQRKIKYMTSRNQEEPNESDDAGMVKLGLTNNELRRGELVTVADGDGQQYVVLEVIQLEDGTEQHVAVVAPDYMECEDENAEEEEEEEEEEERESAQTEVRVKDTVLEKSIKLEKDVNSCFGFDDEEEGENDEDYEMLEART

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00654560;
90% Identity
iTF_00156512;
80% Identity
-