Acra000955.1
Basic Information
- Insect
- Archips crataeganus
- Gene Symbol
- -
- Assembly
- GCA_947859365.1
- Location
- OX402073.1:7755078-7757390[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 5.2 3.5e+02 2.6 2.1 1 23 45 68 45 68 0.95 2 16 0.032 2.1 9.6 0.1 2 23 93 114 92 114 0.93 3 16 0.00097 0.066 14.3 0.2 1 23 136 158 136 158 0.98 4 16 0.036 2.5 9.4 0.8 1 22 162 183 162 185 0.89 5 16 0.0015 0.1 13.7 1.0 1 21 190 210 190 211 0.97 6 16 0.12 8.2 7.7 0.8 2 23 219 241 219 241 0.93 7 16 0.00056 0.038 15.0 0.4 2 23 286 308 285 308 0.95 8 16 4.2 2.9e+02 2.9 0.3 2 23 333 355 332 355 0.90 9 16 0.017 1.2 10.4 0.8 1 23 377 399 377 399 0.97 10 16 0.011 0.75 11.0 0.3 3 23 405 426 404 426 0.91 11 16 0.041 2.8 9.2 1.1 1 21 431 451 431 452 0.96 12 16 0.89 60 5.0 0.2 1 10 459 468 459 482 0.86 13 16 0.01 0.68 11.1 1.2 1 19 489 507 489 512 0.83 14 16 0.0011 0.072 14.2 5.8 1 23 516 538 516 538 0.96 15 16 1.6e-05 0.0011 19.9 1.8 2 23 545 566 544 566 0.95 16 16 0.0055 0.37 11.9 2.3 3 23 574 594 573 595 0.94
Sequence Information
- Coding Sequence
- ATGGGTAGGAACCAACTGAATTATTTCTTCTTTTTAGGTATAGAATGGAAGAACCAGGAGGTCACCAAGCGGAATGCGTCTGTCATACTGAAGCATTCCTCTGCCTATCCGTTCCAGCAGACTTCTAACATATTCCGGTGTTGTTTCTGTTTAGATGTATACGAAAAACCCCAAGAGTTCAGAGAGCACATGGATTCTCAACACCCAAATATTGATAAGTCGGATCTCCCTTCAAACGTGTCGGATAACCTAGTTCGCGTTGATATAACAAACTTGCACTGCAACGTCTGTTCTGCTGCTTTCGAAAAGCTAGACGATCTGGCGGCACATTTAGTTGAACATGACCTAAATATAGATACTACTAAACCAATCGGCCTGGTACCTTTTAAACTTGATAGCGATCGTTTCGTATGCGTCGTTTGCGAGAAAGTCTTCCCGGGCTTCTTCCAACTGTCTAGACATACAGCTACACATTTCAGTAATTTTGTATGCGTTGCGTGTGGATGTACATTCGAGACTTTATCAGGGCTCCGTTACCACGAAATATTTAGTCATAAAGCATCCAAATACACGTGCAGAGTCTGCATGAAATCATTCTCGAGTAAAGACGAAAAGAGGAAGCATATTAGGGAAAACGCAGCATGTATGCCCGCCAAGTGTTACATATGCAAAGAGCGCCTCCCATCGTGGGATCACAAGGAAAAGCATTTAATAGAGATGCATGGCAAGCCGAAGAAGAGTTACCCTTGCATGGAATACATCCTTGGATGGAGTCGGGATGCCGCCAAGCTGAACGCCCAAATAATACTGAGACACTCGACGGCGTATCCGTTCCTGCAATCTTCTAACTCGTTGAGGTGCTGTTTTTGCCCGGAGGTTTTCAACGATCCTACGCTTTTTAGAGCTCACATGGACGTCATACATATGGGCGTTGACAGGTCCACATGCAACAAAGCAAACCTGGATACGCAGACACGTGTTGATGTCACAAACCTGCGTTGCGTAAAATGCATAAAGAAATTCGCCTCCATTGAAGCCGTCGCCAAACATTTACACGACGAGCACGAACTCGAAATCCAGTTAAGCCAAAGCCTAGGTCTTGTGCCATTAAAACTCGAGAAAGATCGCTTCGAATGCGTCGTTTGTTCCCAAAAATTCACAAGTACCATGCAAGTGTCCAGACACACCGGCACGCACTATTTTAGAAACATATGCGACATATGTGGGAAAAGGTTTGAGAGTAGACGCGGAATCGATAGCCATGTCAAATTACGCCATACGTCAAGGTCTTTTTACTGTCGAAAGTGTAAGGGATCTTTCACAACCCTGGAAGCTAAGAAGGAGCACATGCGTCAAAGTAAATCTTGCCTGCCTTTTAGGTGTAACATATGTAAAGAGCGGTTTTTGTTTTGGGAAAGAAGAGAGGATCATTTGGTCGAGGCTCACGGTAAAGAAAAGAAACTGTTTCGGTGCACGGAATGCGAGAAAGTTTTTGAACGGCGTACGCTGCTGTACTTTCATTTTAAGGCAGCTCACACGGAAGATCACAAGTGCACGTACTGTGAATTGACTTTTTCCACTAGACGGGATTTACGCGAACACACGCATCTACACACTGGCGAACGACCGCTCAAATGTCATGTATGCGACAAAACGTTCACCCGTGATAAGGCTTTGAAACAACATTTGGTCATTCATGATGATAGCAAAAAGAAAATATGCACTGTTTGCAGCAGACTCTTCACTGATCGTAAAAAATTACGCGTTCACGTCGAGAAACATCACCCTGAAGTTTTCCAACAGGAATTTGCTCTGAATCCCAAATGA
- Protein Sequence
- MGRNQLNYFFFLGIEWKNQEVTKRNASVILKHSSAYPFQQTSNIFRCCFCLDVYEKPQEFREHMDSQHPNIDKSDLPSNVSDNLVRVDITNLHCNVCSAAFEKLDDLAAHLVEHDLNIDTTKPIGLVPFKLDSDRFVCVVCEKVFPGFFQLSRHTATHFSNFVCVACGCTFETLSGLRYHEIFSHKASKYTCRVCMKSFSSKDEKRKHIRENAACMPAKCYICKERLPSWDHKEKHLIEMHGKPKKSYPCMEYILGWSRDAAKLNAQIILRHSTAYPFLQSSNSLRCCFCPEVFNDPTLFRAHMDVIHMGVDRSTCNKANLDTQTRVDVTNLRCVKCIKKFASIEAVAKHLHDEHELEIQLSQSLGLVPLKLEKDRFECVVCSQKFTSTMQVSRHTGTHYFRNICDICGKRFESRRGIDSHVKLRHTSRSFYCRKCKGSFTTLEAKKEHMRQSKSCLPFRCNICKERFLFWERREDHLVEAHGKEKKLFRCTECEKVFERRTLLYFHFKAAHTEDHKCTYCELTFSTRRDLREHTHLHTGERPLKCHVCDKTFTRDKALKQHLVIHDDSKKKICTVCSRLFTDRKKLRVHVEKHHPEVFQQEFALNPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00342499; iTF_01136091;
- 90% Identity
- -
- 80% Identity
- -