Basic Information

Insect: Pandemis heparana
Gene Symbol: -
Assembly: GCA_963854515.1
Location: OY978032.1:7600867-7602997[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0084 0.55 11.5 0.1 2 23 30 51 29 51 0.96

2 15 0.0007 0.046 14.9 0.4 1 23 73 95 73 95 0.97

3 15 0.096 6.3 8.2 3.0 1 21 99 119 99 122 0.89

4 15 0.0038 0.25 12.6 0.8 2 21 128 147 128 148 0.95

5 15 0.031 2.1 9.7 0.4 2 23 156 178 156 178 0.93

6 15 0.00048 0.032 15.4 0.2 2 23 212 234 211 234 0.95

7 15 4.5 3e+02 2.9 0.3 2 23 259 281 258 281 0.90

8 15 0.016 1.1 10.6 0.8 1 23 303 325 303 325 0.97

9 15 0.011 0.7 11.2 0.3 3 23 331 352 330 352 0.91

10 15 0.033 2.2 9.6 0.8 1 21 357 377 357 378 0.96

11 15 0.87 57 5.2 0.2 1 10 385 394 385 408 0.86

12 15 0.0028 0.19 13.0 1.3 1 19 415 433 415 438 0.83

13 15 0.001 0.067 14.4 5.8 1 23 442 464 442 464 0.96

14 15 3.1e-05 0.0021 19.1 1.1 2 23 471 492 470 492 0.95

15 15 0.0051 0.33 12.2 2.0 3 23 500 520 499 521 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0084	0.55	11.5	0.1	2	23	30	51	29	51	0.96
2	15	0.0007	0.046	14.9	0.4	1	23	73	95	73	95	0.97
3	15	0.096	6.3	8.2	3.0	1	21	99	119	99	122	0.89
4	15	0.0038	0.25	12.6	0.8	2	21	128	147	128	148	0.95
5	15	0.031	2.1	9.7	0.4	2	23	156	178	156	178	0.93
6	15	0.00048	0.032	15.4	0.2	2	23	212	234	211	234	0.95
7	15	4.5	3e+02	2.9	0.3	2	23	259	281	258	281	0.90
8	15	0.016	1.1	10.6	0.8	1	23	303	325	303	325	0.97
9	15	0.011	0.7	11.2	0.3	3	23	331	352	330	352	0.91
10	15	0.033	2.2	9.6	0.8	1	21	357	377	357	378	0.96
11	15	0.87	57	5.2	0.2	1	10	385	394	385	408	0.86
12	15	0.0028	0.19	13.0	1.3	1	19	415	433	415	438	0.83
13	15	0.001	0.067	14.4	5.8	1	23	442	464	442	464	0.96
14	15	3.1e-05	0.0021	19.1	1.1	2	23	471	492	470	492	0.95
15	15	0.0051	0.33	12.2	2.0	3	23	500	520	499	521	0.94

Sequence Information

Coding Sequence: ATGGATTCTCAACACCCAGACATTGACAAGTCAGATCTTCCCTCAAATGACTCTGACAGCCTAATCCGTGTTGATATCACAGATTTGCACTGCAACGTTTGCTCTGCTCGCTTCGAAATGCTAGACGATCTAGCGGCGCATTTAGCTACTCATGATCTAGATATAGATACCGCTGCAAATATCGGCCTGGTGCCTTTTAAACTTGATAGCAATCGTTTCGTATGCGTCGTTTGCGAGAAAGTATTTTCGGGTTTTTTTCAATTGTCCAGACATACCGCTTCGCACTTCAGAAACTTCGTGTGTGAAGCGTGCGGGTGTACTTTTGAGACTCAATCAGGGTTCCATTATCACGAAATATTTAGTCACAAAGCACCCAAAAACACGTGTAGAGTCTGCTTGAAATCATTCTCGACTAGAGACGAGAGGAGAAAGCATATTAAGGAAAACCCAGAATGTATGCCTGCGAAATGTTACATATGCAAAGAGCGTTTCCCATCCTGGGATCGTAAGGAACGGCATTTGATAGAAATGCATGACATCCTTGGATGGAGTCGGGATGCCGCCAAGCAGAACGCCCAAATAATATTGAGACACACGACGGCGTATCCGTTCCTGCAATCTTCTAACTCGTTGCGATGCTGTTTTTGCCCGGAGGTTTTCAACGACCCCGCGCTGTTTAGAGCTCACATGGACGTCATACACATAGGCGTAGATAGGTCCACGTGCAACAAAGCGAACCTTGATACGCAGACGCGTGTTGATGTCACGAACCTGCGTTGTGTTAAGTGCATAAAAATATTCGCATCCATTGAATCTGTCGCTAAACATTTGCACGACGAGCACGAACTCGGGATCCAGTTGAGCCAAAGCCTTGGTCTTGTGCCATTAAAACTAGAAAAAGATCGCTTCGAATGTGTCGTTTGTTCTCAGAAATTCACTAGCACTATGCAAGTGTCCAGGCACACTGGCACGCACTATTTTAGAAATATATGCGACATATGCGGAAAGAGGTTTGAGAGTCGAAGGGGAATTGATAGTCATGTGAAATTACGTCATACGTCAAGGTCTTTTTATTGTAGAAAATGTAAGGGCTCTTTCACAACTCTAGAAGCTAAAAAGGAGCATATGCGTGAAAATAAATCTTGCCTGCCTTTTAGATGTAACATTTGCAAAGAGCGGTTTTTGTTTTGGGAGCGAAGAGAGGATCACTTGGTCGAGGTTCATGGTAAAGAAAAGAAACTGTTTCGATGCACGGAATGCGATAAAGTTTTTGAACGGCGCACACTGTTGTACTTTCATTTTAAGGCAGCTCACACGGAGGATCATAAGTGCACATATTGTGAATTAACTTTTTCTACAAGACGGGATTTACGCGAACACACACACTTGCATACGGGCGAGCGCCCTCTGAAATGTCATGTGTGTGACAAAACTTTTGTACGTGACAAGGCTTTGAGGCAGCATTTAGTCATTCATGATGATAGCAAAAAGAAAATTTGCACTGTGTGCAGCAGACTCTTCACTGATCGTAAAAAATTACGCGTTCACGTTGCGAAACATCACCCAGAAGTTTTTCCAGAGGAATGTGCTCTGAATCCCAAATGA
Protein Sequence: MDSQHPDIDKSDLPSNDSDSLIRVDITDLHCNVCSARFEMLDDLAAHLATHDLDIDTAANIGLVPFKLDSNRFVCVVCEKVFSGFFQLSRHTASHFRNFVCEACGCTFETQSGFHYHEIFSHKAPKNTCRVCLKSFSTRDERRKHIKENPECMPAKCYICKERFPSWDRKERHLIEMHDILGWSRDAAKQNAQIILRHTTAYPFLQSSNSLRCCFCPEVFNDPALFRAHMDVIHIGVDRSTCNKANLDTQTRVDVTNLRCVKCIKIFASIESVAKHLHDEHELGIQLSQSLGLVPLKLEKDRFECVVCSQKFTSTMQVSRHTGTHYFRNICDICGKRFESRRGIDSHVKLRHTSRSFYCRKCKGSFTTLEAKKEHMRENKSCLPFRCNICKERFLFWERREDHLVEVHGKEKKLFRCTECDKVFERRTLLYFHFKAAHTEDHKCTYCELTFSTRRDLREHTHLHTGERPLKCHVCDKTFVRDKALRQHLVIHDDSKKKICTVCSRLFTDRKKLRVHVAKHHPEVFPEECALNPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00155614;
90% Identity: -
80% Identity: -