Basic Information

Insect: Clepsis dumicolana
Gene Symbol: -
Assembly: GCA_963691665.1
Location: OY829530.1:5821672-5823786[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.01 0.7 11.2 0.0 2 23 30 51 29 51 0.93

2 15 0.011 0.76 11.1 0.1 3 23 73 93 72 93 0.96

3 15 0.00046 0.032 15.4 2.6 1 23 97 120 97 120 0.93

4 15 0.0085 0.59 11.4 1.3 1 21 125 145 125 146 0.95

5 15 8.3 5.7e+02 2.0 0.4 2 23 154 176 154 176 0.81

6 15 2.2e-05 0.0015 19.6 2.2 1 23 183 206 183 206 0.95

7 15 0.018 1.2 10.4 0.2 2 23 248 270 247 270 0.94

8 15 0.017 1.2 10.5 0.8 1 23 339 361 339 361 0.97

9 15 0.011 0.76 11.1 0.3 3 23 367 388 366 388 0.91

10 15 0.053 3.7 8.9 0.7 1 21 393 413 393 414 0.96

11 15 0.88 61 5.1 0.2 1 10 421 430 421 444 0.86

12 15 0.0098 0.68 11.2 1.2 1 19 451 469 451 474 0.83

13 15 0.0028 0.19 12.9 8.6 1 23 478 500 478 500 0.96

14 15 1.7e-05 0.0011 20.0 1.7 2 23 507 528 506 528 0.95

15 15 0.0064 0.44 11.8 2.4 3 23 536 556 535 557 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.01	0.7	11.2	0.0	2	23	30	51	29	51	0.93
2	15	0.011	0.76	11.1	0.1	3	23	73	93	72	93	0.96
3	15	0.00046	0.032	15.4	2.6	1	23	97	120	97	120	0.93
4	15	0.0085	0.59	11.4	1.3	1	21	125	145	125	146	0.95
5	15	8.3	5.7e+02	2.0	0.4	2	23	154	176	154	176	0.81
6	15	2.2e-05	0.0015	19.6	2.2	1	23	183	206	183	206	0.95
7	15	0.018	1.2	10.4	0.2	2	23	248	270	247	270	0.94
8	15	0.017	1.2	10.5	0.8	1	23	339	361	339	361	0.97
9	15	0.011	0.76	11.1	0.3	3	23	367	388	366	388	0.91
10	15	0.053	3.7	8.9	0.7	1	21	393	413	393	414	0.96
11	15	0.88	61	5.1	0.2	1	10	421	430	421	444	0.86
12	15	0.0098	0.68	11.2	1.2	1	19	451	469	451	474	0.83
13	15	0.0028	0.19	12.9	8.6	1	23	478	500	478	500	0.96
14	15	1.7e-05	0.0011	20.0	1.7	2	23	507	528	506	528	0.95
15	15	0.0064	0.44	11.8	2.4	3	23	536	556	535	557	0.94

Sequence Information

Coding Sequence: ATGGATTCTCACCACCCAAACGTTGACAAGTCGGAACTCCCTTCAATTGCATCTGAAAACCTAGTTCGCGTTGATATCACCGACTTGCACTGCAATGTCTGCTCTGCTCCCTTTGCAAATCTAGACGATCTGGCGGCACACTTAGTTGAACACGACCTAGACATAGATACCACTGAACAAATTGGTCTGGTGCCTTTTAAACTCGACAGCAACGCATGCGTCGTTTGCGATAAGATCTTTCCCGGCTTCTTCCAACTGTCCAGACACACCGTCACACACTTCTGTAACTTCGTATGCGAAACTTGCGGATGCACGTTCGAGACTCAATCAGGGCTCCGTTATCACGAAAAATTTAGTCATATGTCATCCAAACACACGTGCAGAGTCTGTTTGACATCATTCTCGACTAGAGATGAAAGGAGGAAGCATATTAAGGAAAACAAAGCTTGCATGCCGGCAAAGTGCTACGTATGCAAAGAGCGCTTCTTATCTTGGGATCGTAAGGAACAACATTTGATAGAGATGCATGGCAAACCAAAGAAGAGTTACCCTTGCACGCAATGTGACAAAGTGTTCGAACAAAATTCACAGTTGTACCATCATTTTAAGTTGATCCACACTAATGATCTTGAGTGTCAATATTACTTCCTTGGATGGAGTCGGGATGCCGCCAAGCTGAACGCCCAAATAATACTGAGACACTCGACGGCGTATCCGTTCCAGCAATCGTCTAACGCGTTGCGGTGCTGTTTTTGCCCGGACGTTTTCAACGACCCCGCGCTGTTTAGAGCTCATATGGACGTCATACACATGGGCGTTGACAGATCAACATGCAACAAAGCTAACCTGGACACACAGACACGTGTTGACGTCACGAACCTGCGATGCGCAAGATGCATCAAAAAATTCGCCTCCATTGAAGCCGTCGCCAAACATTTGCACGACGAGCACGAACTCGAAATCCAGTTGAGCCAGAGCTTAGGTCTTGTGCCATTAAAACTTGAAAAAGATCGCTTCGAATGCGTCGTTTGTTCGCAAAAATTCACTAGCACTATGCAAGTGTCCAGACACACTGGTACGCACTATTTTAGAAACATATGTGACATATGCGGTAAAAGATTTGAGAGTAGAAGAGGAATTGATAGCCATGTCAAATTACGCCACACGTCGAGGACTTTTTATTGTAGACAATGCAAGGGCTCCTTCACAACCCTGGAAGCTAAACAAGAACATATGCGTCAGAATAAATCTTGCCTGCCATTTAGGTGTAACATATGTAAAGAGCGGTTTTTGTTTTGGGAGAGAAGAGAAGATCATTTGGTGGAGGCTCATGGTAAAGAAAAGAAATTGTTTCGCTGCACGGAATGCGAGAAAGTGTTTGAGCGGCGCACGCTGCTGTACTTTCATTTTAAGGCGGCTCATACGGAGGATCATAAGTGCACGTACTGTCATCTAACTTTTTCCACTAGGCGAGATTTACGCGAACACACACACTTACACACTGGCGAGCGACCTCTAAAGTGTCATGTCTGCGATAAAACGTTCACCCGAGACAAGGCTCTGAGGCAACATCTAGTCATTCATGACGACAGCAAAAAGAAAATATGCACTGTTTGCAGCCGACTCTTCACTGATCGTAAAAAATTACGCATTCACGTTGAAAAACATCATCCCGAAATTTATCAACAGGAATTTGCGCTGAATCGCAAATGA
Protein Sequence: MDSHHPNVDKSELPSIASENLVRVDITDLHCNVCSAPFANLDDLAAHLVEHDLDIDTTEQIGLVPFKLDSNACVVCDKIFPGFFQLSRHTVTHFCNFVCETCGCTFETQSGLRYHEKFSHMSSKHTCRVCLTSFSTRDERRKHIKENKACMPAKCYVCKERFLSWDRKEQHLIEMHGKPKKSYPCTQCDKVFEQNSQLYHHFKLIHTNDLECQYYFLGWSRDAAKLNAQIILRHSTAYPFQQSSNALRCCFCPDVFNDPALFRAHMDVIHMGVDRSTCNKANLDTQTRVDVTNLRCARCIKKFASIEAVAKHLHDEHELEIQLSQSLGLVPLKLEKDRFECVVCSQKFTSTMQVSRHTGTHYFRNICDICGKRFESRRGIDSHVKLRHTSRTFYCRQCKGSFTTLEAKQEHMRQNKSCLPFRCNICKERFLFWERREDHLVEAHGKEKKLFRCTECEKVFERRTLLYFHFKAAHTEDHKCTYCHLTFSTRRDLREHTHLHTGERPLKCHVCDKTFTRDKALRQHLVIHDDSKKKICTVCSRLFTDRKKLRIHVEKHHPEIYQQEFALNRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00155614;
90% Identity: -
80% Identity: -