Basic Information

Insect: Aradus depressus
Gene Symbol: -
Assembly: GCA_963662175.1
Location: OY759221.1:1369862-1383676[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.3 1.3e+03 1.0 0.1 39 49 105 115 90 117 0.77

2 16 0.62 2.8e+03 -0.0 0.1 21 44 136 159 129 168 0.84

3 16 0.024 1.1e+02 4.5 0.4 22 52 165 195 148 196 0.84

4 16 0.16 7.3e+02 1.8 0.0 23 46 194 217 191 225 0.87

5 16 0.13 5.9e+02 2.1 0.1 34 49 237 251 226 254 0.70

6 16 0.0043 19 6.9 0.1 10 48 287 324 284 329 0.86

7 16 0.028 1.3e+02 4.3 0.4 18 44 323 349 322 357 0.85

8 16 0.01 47 5.6 0.0 21 48 354 381 351 385 0.83

9 16 0.017 75 5.0 0.2 21 46 382 407 380 413 0.85

10 16 0.021 93 4.7 0.0 21 44 410 433 407 437 0.90

11 16 0.00041 1.9 10.1 0.2 22 47 439 464 436 469 0.85

12 16 0.00011 0.48 12.0 0.0 22 48 467 493 464 497 0.86

13 16 0.055 2.5e+02 3.3 0.0 22 44 495 517 492 525 0.87

14 16 0.064 2.9e+02 3.1 0.0 21 47 522 548 519 555 0.85

15 16 0.67 3e+03 -0.2 0.1 22 46 551 575 547 581 0.80

16 16 0.0013 5.8 8.5 0.2 21 45 578 602 573 605 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.3	1.3e+03	1.0	0.1	39	49	105	115	90	117	0.77
2	16	0.62	2.8e+03	-0.0	0.1	21	44	136	159	129	168	0.84
3	16	0.024	1.1e+02	4.5	0.4	22	52	165	195	148	196	0.84
4	16	0.16	7.3e+02	1.8	0.0	23	46	194	217	191	225	0.87
5	16	0.13	5.9e+02	2.1	0.1	34	49	237	251	226	254	0.70
6	16	0.0043	19	6.9	0.1	10	48	287	324	284	329	0.86
7	16	0.028	1.3e+02	4.3	0.4	18	44	323	349	322	357	0.85
8	16	0.01	47	5.6	0.0	21	48	354	381	351	385	0.83
9	16	0.017	75	5.0	0.2	21	46	382	407	380	413	0.85
10	16	0.021	93	4.7	0.0	21	44	410	433	407	437	0.90
11	16	0.00041	1.9	10.1	0.2	22	47	439	464	436	469	0.85
12	16	0.00011	0.48	12.0	0.0	22	48	467	493	464	497	0.86
13	16	0.055	2.5e+02	3.3	0.0	22	44	495	517	492	525	0.87
14	16	0.064	2.9e+02	3.1	0.0	21	47	522	548	519	555	0.85
15	16	0.67	3e+03	-0.2	0.1	22	46	551	575	547	581	0.80
16	16	0.0013	5.8	8.5	0.2	21	45	578	602	573	605	0.91

Sequence Information

Coding Sequence: ATGAAGGAGGAAGAAAGGGAGGCATATTATTGTCGAATTGGTGAATTTTTGTCAAGAAACAACGAAGATTCAGATAAGGGTGCGGAAGATACAAATGAAGAGTACATCCTTGATGCATGTGCTTCGGATGAAGAACAAGTTGTTGTAGTTGAAAGAGAAGCTGATAAAGAAGATAATAGTGACTATGAAGAGGAACTGGCTGCGCTAAAGAATGCTGTTGTGtcacaacaacaacaacaacaagaTCATAGAGATGGTGCGGGTGTCAAGATGATGTGTGGCCACTGCGGGGCTGGAAGTGTCAGTTTGGGCAGACTCAGGAGGCACATTGTATACAGACATATAGAGAGCGACCTTCAGACAGACACGTTCATGGATTACCTCCAGCCGGTGGAGCAGATCGTAGAAGAGAAACCCTTCCAGTGTACTTTCTGCAGTTACAGGGGCCGACTGCCTGCTCATTTGAGGAAACACATGTTAACACACACTGAAGAGAGGCAGTTTCAGTGTCCACTCTGCAGCTATTGCGGTAGAACTTCTGCAAAGTTAGAAAAGCATATGATGATACACACGGGGGTGAAACCCTTCCACTGTACATTATGCAACTACAGCGGCAGGGAAGCTGGCAAGTTAAAAAGGCATATGACAATACACACTGGAGATGGTGCGGGTGTGAAGGTGATGTGTGGCCACTGCGGGGCTGGAAGTATCAGTTTGAGCAGACTCAGGAGGCACATTGTTTACAGACATATAGAGAGTGGCCTTCAGACAGACACCTCCCGGGGGCGTCACCTACCACCTCTCCTCAGTGAAGTAGACACCTCCAGGGGGCACCACCAGCCACTTCTTCTCGCCCGTCCTACACAGGATACTCCTCTCTCTGTCCAAGACCCTGACAAACCATTCCAGTGTTCCTTGTGCAGATATAGCGGTCGAAAAGCCTATGATTTGAAGAGACATATGGTAAGACACACAGAGGAGAAACCCTTTCAATGCTCCATATGTAGTTTTACATGTAGGCGTCatggaattttgaagaaacaTATCCTGACACACACAGAAGAAAAACCATTCCCGTGTACATTTTGTGGCTATAATGGTAGAACAGCTGACAATTTAAAAAGACATATGCTGATACACACTGCAGAAAAACCATTTCAATGTTCGATCTGTAACTACAGTTGCAGAGCAGCTGACAAGCTGAAAAATCATATGTTAATACACAccggagagaaacctttccaatgcaCTTTCTGCAGCAGTAATTTTCGGCAAATTGGTCATCTGAAGAAACATATGTTGATCCACACGGAAGAGGCCCCATTCCGATGTACAGTCTGTAGTTACACCTGCAGACAGTCCGGCAGTCTGAAGAAACATCTGCTTATACACACGGAGGAGAAACCCTACCAATGCACGTTGTGCGTCTATAGTGGCAGAGATTCGGAAAATTTGAAAAGGCATATGTTATTGCACATGGGAGAAAAGCCTTTTAAGTGTAAATTGTGCAGCTATGGCTGTAGAAAAGTTGTCAATTtaaagacgcatatgttgacaCACACGGGAGAGAAACCATTTGAATGTGAACTTTGTAGTTATACTGGTAGGTTAGCTAAGGATTTAAAGAAGCATATGTTGGTACACACGAGAGAAAAACCATTTCATTGCACTTTCTGCAGCTATAGCTGTAGAGAACAGCAGAGATTAGACATGCATGTGCGAGTGCACactggagagaaaccattccagTGCACTTACTGTACCAACAAATACCGGCAGCTCGGTCATCTGAGGAGGCACCTCGTCATACACACGGAATAG
Protein Sequence: MKEEEREAYYCRIGEFLSRNNEDSDKGAEDTNEEYILDACASDEEQVVVVEREADKEDNSDYEEELAALKNAVVSQQQQQQDHRDGAGVKMMCGHCGAGSVSLGRLRRHIVYRHIESDLQTDTFMDYLQPVEQIVEEKPFQCTFCSYRGRLPAHLRKHMLTHTEERQFQCPLCSYCGRTSAKLEKHMMIHTGVKPFHCTLCNYSGREAGKLKRHMTIHTGDGAGVKVMCGHCGAGSISLSRLRRHIVYRHIESGLQTDTSRGRHLPPLLSEVDTSRGHHQPLLLARPTQDTPLSVQDPDKPFQCSLCRYSGRKAYDLKRHMVRHTEEKPFQCSICSFTCRRHGILKKHILTHTEEKPFPCTFCGYNGRTADNLKRHMLIHTAEKPFQCSICNYSCRAADKLKNHMLIHTGEKPFQCTFCSSNFRQIGHLKKHMLIHTEEAPFRCTVCSYTCRQSGSLKKHLLIHTEEKPYQCTLCVYSGRDSENLKRHMLLHMGEKPFKCKLCSYGCRKVVNLKTHMLTHTGEKPFECELCSYTGRLAKDLKKHMLVHTREKPFHCTFCSYSCREQQRLDMHVRVHTGEKPFQCTYCTNKYRQLGHLRRHLVIHTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00154700;
90% Identity: iTF_00154700;
80% Identity: iTF_00154700;