Basic Information

Insect: Aradus depressus
Gene Symbol: -
Assembly: GCA_963662175.1
Location: OY759221.1:1369862-1383676[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.13 23 7.1 0.2 2 23 92 114 91 114 0.91

2 16 0.00074 0.13 14.2 2.7 1 23 140 162 140 162 0.99

3 16 4.4e-05 0.0076 18.1 1.4 1 23 168 190 168 190 0.98

4 16 0.0023 0.4 12.6 1.7 1 23 196 218 196 218 0.97

5 16 0.046 8 8.5 0.3 2 23 228 250 227 250 0.91

6 16 0.00033 0.057 15.3 1.4 1 23 302 324 302 324 0.98

7 16 0.014 2.4 10.2 5.4 1 23 330 352 330 352 0.99

8 16 8e-06 0.0014 20.4 0.3 1 23 358 380 358 380 0.98

9 16 5e-05 0.0087 17.9 1.6 1 23 386 408 386 408 0.98

10 16 0.00031 0.054 15.4 3.4 1 23 414 436 414 436 0.98

11 16 6.2e-05 0.011 17.6 3.3 1 23 442 464 442 464 0.98

12 16 4.5e-05 0.0078 18.0 0.5 1 23 470 492 470 492 0.98

13 16 0.00087 0.15 14.0 3.7 1 23 498 520 498 520 0.99

14 16 0.00096 0.17 13.8 0.3 1 23 526 548 526 548 0.98

15 16 1.4 2.4e+02 3.9 5.6 1 23 554 576 554 576 0.97

16 16 0.00031 0.054 15.4 3.2 1 23 582 604 582 604 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.13	23	7.1	0.2	2	23	92	114	91	114	0.91
2	16	0.00074	0.13	14.2	2.7	1	23	140	162	140	162	0.99
3	16	4.4e-05	0.0076	18.1	1.4	1	23	168	190	168	190	0.98
4	16	0.0023	0.4	12.6	1.7	1	23	196	218	196	218	0.97
5	16	0.046	8	8.5	0.3	2	23	228	250	227	250	0.91
6	16	0.00033	0.057	15.3	1.4	1	23	302	324	302	324	0.98
7	16	0.014	2.4	10.2	5.4	1	23	330	352	330	352	0.99
8	16	8e-06	0.0014	20.4	0.3	1	23	358	380	358	380	0.98
9	16	5e-05	0.0087	17.9	1.6	1	23	386	408	386	408	0.98
10	16	0.00031	0.054	15.4	3.4	1	23	414	436	414	436	0.98
11	16	6.2e-05	0.011	17.6	3.3	1	23	442	464	442	464	0.98
12	16	4.5e-05	0.0078	18.0	0.5	1	23	470	492	470	492	0.98
13	16	0.00087	0.15	14.0	3.7	1	23	498	520	498	520	0.99
14	16	0.00096	0.17	13.8	0.3	1	23	526	548	526	548	0.98
15	16	1.4	2.4e+02	3.9	5.6	1	23	554	576	554	576	0.97
16	16	0.00031	0.054	15.4	3.2	1	23	582	604	582	604	0.97

Sequence Information

Coding Sequence: ATGAAGGAGGAAGAAAGGGAGGCATATTATTGTCGAATTGGTGAATTTTTGTCAAGAAACAACGAAGATTCAGATAAGGGTGCGGAAGATACAAATGAAGAGTACATCCTTGATGCATGTGCTTCGGATGAAGAACAAGTTGTTGTAGTTGAAAGAGAAGCTGATAAAGAAGATAATAGTGACTATGAAGAGGAACTGGCTGCGCTAAAGAATGCTGTTGTGtcacaacaacaacaacaacaagaTCATAGAGATGGTGCGGGTGTCAAGATGATGTGTGGCCACTGCGGGGCTGGAAGTGTCAGTTTGGGCAGACTCAGGAGGCACATTGTATACAGACATATAGAGAGCGACCTTCAGACAGACACGTTCATGGATTACCTCCAGCCGGTGGAGCAGATCGTAGAAGAGAAACCCTTCCAGTGTACTTTCTGCAGTTACAGGGGCCGACTGCCTGCTCATTTGAGGAAACACATGTTAACACACACTGAAGAGAGGCAGTTTCAGTGTCCACTCTGCAGCTATTGCGGTAGAACTTCTGCAAAGTTAGAAAAGCATATGATGATACACACGGGGGTGAAACCCTTCCACTGTACATTATGCAACTACAGCGGCAGGGAAGCTGGCAAGTTAAAAAGGCATATGACAATACACACTGGAGATGGTGCGGGTGTGAAGGTGATGTGTGGCCACTGCGGGGCTGGAAGTATCAGTTTGAGCAGACTCAGGAGGCACATTGTTTACAGACATATAGAGAGTGGCCTTCAGACAGACACCTCCCGGGGGCGTCACCTACCACCTCTCCTCAGTGAAGTAGACACCTCCAGGGGGCACCACCAGCCACTTCTTCTCGCCCGTCCTACACAGGATACTCCTCTCTCTGTCCAAGACCCTGACAAACCATTCCAGTGTTCCTTGTGCAGATATAGCGGTCGAAAAGCCTATGATTTGAAGAGACATATGGTAAGACACACAGAGGAGAAACCCTTTCAATGCTCCATATGTAGTTTTACATGTAGGCGTCatggaattttgaagaaacaTATCCTGACACACACAGAAGAAAAACCATTCCCGTGTACATTTTGTGGCTATAATGGTAGAACAGCTGACAATTTAAAAAGACATATGCTGATACACACTGCAGAAAAACCATTTCAATGTTCGATCTGTAACTACAGTTGCAGAGCAGCTGACAAGCTGAAAAATCATATGTTAATACACAccggagagaaacctttccaatgcaCTTTCTGCAGCAGTAATTTTCGGCAAATTGGTCATCTGAAGAAACATATGTTGATCCACACGGAAGAGGCCCCATTCCGATGTACAGTCTGTAGTTACACCTGCAGACAGTCCGGCAGTCTGAAGAAACATCTGCTTATACACACGGAGGAGAAACCCTACCAATGCACGTTGTGCGTCTATAGTGGCAGAGATTCGGAAAATTTGAAAAGGCATATGTTATTGCACATGGGAGAAAAGCCTTTTAAGTGTAAATTGTGCAGCTATGGCTGTAGAAAAGTTGTCAATTtaaagacgcatatgttgacaCACACGGGAGAGAAACCATTTGAATGTGAACTTTGTAGTTATACTGGTAGGTTAGCTAAGGATTTAAAGAAGCATATGTTGGTACACACGAGAGAAAAACCATTTCATTGCACTTTCTGCAGCTATAGCTGTAGAGAACAGCAGAGATTAGACATGCATGTGCGAGTGCACactggagagaaaccattccagTGCACTTACTGTACCAACAAATACCGGCAGCTCGGTCATCTGAGGAGGCACCTCGTCATACACACGGAATAG
Protein Sequence: MKEEEREAYYCRIGEFLSRNNEDSDKGAEDTNEEYILDACASDEEQVVVVEREADKEDNSDYEEELAALKNAVVSQQQQQQDHRDGAGVKMMCGHCGAGSVSLGRLRRHIVYRHIESDLQTDTFMDYLQPVEQIVEEKPFQCTFCSYRGRLPAHLRKHMLTHTEERQFQCPLCSYCGRTSAKLEKHMMIHTGVKPFHCTLCNYSGREAGKLKRHMTIHTGDGAGVKVMCGHCGAGSISLSRLRRHIVYRHIESGLQTDTSRGRHLPPLLSEVDTSRGHHQPLLLARPTQDTPLSVQDPDKPFQCSLCRYSGRKAYDLKRHMVRHTEEKPFQCSICSFTCRRHGILKKHILTHTEEKPFPCTFCGYNGRTADNLKRHMLIHTAEKPFQCSICNYSCRAADKLKNHMLIHTGEKPFQCTFCSSNFRQIGHLKKHMLIHTEEAPFRCTVCSYTCRQSGSLKKHLLIHTEEKPYQCTLCVYSGRDSENLKRHMLLHMGEKPFKCKLCSYGCRKVVNLKTHMLTHTGEKPFECELCSYTGRLAKDLKKHMLVHTREKPFHCTFCSYSCREQQRLDMHVRVHTGEKPFQCTYCTNKYRQLGHLRRHLVIHTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00154968;
90% Identity: iTF_00154968;
80% Identity: iTF_00154968;