Alei098773.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- -
- Assembly
- GCA_035610365.1
- Location
- CM069438.1:14159440-14161846[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 5 1.2e+05 -4.5 0.3 27 45 186 204 185 206 0.80 2 17 0.0024 58 6.6 0.1 20 53 254 287 244 288 0.84 3 17 0.085 2.1e+03 1.6 0.0 23 52 285 314 280 316 0.86 4 17 0.0057 1.4e+02 5.4 0.0 21 48 311 338 299 344 0.83 5 17 0.038 9.2e+02 2.7 0.0 21 47 339 365 335 372 0.84 6 17 0.0023 55 6.7 0.1 21 53 395 427 391 428 0.89 7 17 0.064 1.6e+03 2.0 0.0 21 52 451 482 443 484 0.84 8 17 0.11 2.5e+03 1.3 0.1 21 52 479 510 463 512 0.83 9 17 0.019 4.7e+02 3.7 0.1 23 53 509 539 506 540 0.89 10 17 0.18 4.4e+03 0.6 0.1 24 44 538 558 536 568 0.77 11 17 0.063 1.5e+03 2.0 0.0 21 52 563 594 555 596 0.83 12 17 0.038 9.1e+02 2.7 0.0 20 52 590 622 576 624 0.83 13 17 0.00072 18 8.2 0.1 21 53 619 651 611 652 0.87 14 17 0.082 2e+03 1.7 0.0 21 51 675 705 671 708 0.83 15 17 0.00027 6.6 9.6 0.1 21 53 703 735 699 736 0.90 16 17 0.13 3.2e+03 1.0 0.0 24 52 734 762 732 764 0.81 17 17 0.013 3.1e+02 4.3 0.2 22 45 760 783 743 785 0.84
Sequence Information
- Coding Sequence
- atgggtGAAAATACAACAAACAGTTGTCGAATATGTCTACAGGAAGTAGTGGAAACAgaacaatattattttcttaacgACAATCAGTTAAAGCTACAATTCAAGTTGTTGGACATTCTGCCACAAATAGACCTAAATATGACATCGAACCCAATTAGTTGTAGTCAATGTATGATGACAATTGCGGAAATATACGAATTCAAGCAACTGTGCTTGCACACTGAAACTACTATAAGGAACTTACAACAAACAATACCTTCTAATAATCTTTTAAGGTATGTTAAAGAAGAGACAATCAAAGAATCATTGCTTGAAGACATTAAAATCGAACCTTTAGATATGCAATTGATCCATGATGATTACAAGGAAACTAATACAGATGGGCTTTTATGTATTAAGGAACCTTCAGAATCAAAATCAGGTTATTGCCCGCTGCATTCTTCAACCCACACAAACAACAACTTATACCTGTGTCATAATTGTGATTATAAGACTAATGAAAAAGATAAGTTGGTCTATCATGTCATGATTCATCGAAATGTAAAACAGTTTAAATGcgatttatgtaattatttgacTCACACTAGGAGATCTTTACATAGTCACATGTTGTTGCACAAAGACTTAAAAGTGAACAATTGCAATCAAAGTGTGCATCGAGCTAGTTTAAACAAACACTTGGTGGAACTACGTCTTTGTGATGCTTGTGGATACTCTACTCGATGTAAGGATAGTTTAGAGAAGCACATCAGAACTCACAGCTCAATTAAACCGTTTGTTTGTGAAATTTGTGGGTTCTCTTCTCAAcataagaataattttaaacgaCATATGAATAGTCACAGCTTggtaaaaccgtttgtttgtaaaacttgtggGTTCTCTTTTCGAAGTGGGTGGGAGTTAAAACGTCACATAAAAACTCACAGCTCAATAAAACcatttgtttgtgaaacttgtgAAGCCTCTTTTCGAAGTTCAGGGGAGTTAAAGAATCACATGATAACTCACAGCTCAAATAAACCGTTTAtttgtgaaacttgtgggttCTCTTCTCGatataagaataatttaaagaaGCACATGATAACTCACAGCTCAGTAAAACCGTTCGCTTGTGAAATTTGTGGGTTCTCTTCTGGatataagaatgttttaaaaaaccacaTGATAACTCACAGCTCagtaaaaccgtttgtttgtgaaacttgtgggCTCTCTTTTCGAAGTGAGCGGGAGTTAGTACGTCACTTGATAACTCACAGCTTAGTAAAACcatttgtttgtgaaacttgtggAATCTCTCTTCAAAGTTCGGGGGAGCTGAAAAATCACATGATAACTCACAGCTCGATTAAACCGTTTAtttgtgaaacttgtgggttTTCTTCTCGATAcaagcataatttaaaaaagcacatGATAACTCACACCTCAGTGAAACCGTTCgtttgtgaaacttgtgggttTTCTTGTCAATATAAGAGTAATTTAAAGAAGCACATGATAACGCACAGCTTAGTAAAACcatttgtttgtgaaacttgtgggttCTCTTTTCGAAGCAGGCGGGAGTTAAAACACCACCTGATAACTCATAGCTTAGTAAAGCCgtttgtttgtgaaacttgtggAATCTGTTTACGAAGATCTGGGGATTTACAGAATCATAAGATGACCCACAGCTCAATTAAACCGTTCAtttgtgaaacttgtgggttTTCTTCTCGATACAAGCATAATTTAAAGAAGCACATGATAACTCACACCTCGGGAAAACCGTTCGTTTGTGAAATTTGTGGTTTCTCTTCTCAATATAAGAGTAATTTAAAGAAGCACGTGATAACTCAGAGCTCAGTAAAACCTTTTGTTTGTGAAATTTGTGGGTTCTCTTTTCGAAGTAGGCGGGAGTTAAAATATCACTTGATAACTCACAGCTTAGTGAAACCgtttgtttgtgaaacttgtggAATCTCTTTCTGTAGGTCGGCCGATTTAAAGAATCACATGATAACTCACAGCTCAAACAAACCGTTCAtttgtgaaacttgtgggttTTCTTCTCGATACAAGCATAATTTAAAGACTCACATGATAACTCATACTTCGGTAAAACCGTTCAtttgtgaaacttgtgggtACTCAACCCGATATCAGAGGAATTTAAAGCAACATATGAAGATTCATACCTTGGTGAAACCGTTTGTTTGTGGAACTTGTGGGTTCTCTTCTCAGCATAAGAATAATCTAAAGAAGCACTTGACAACTCACAGCGCagtaaaaccgtttgtttgtgaaacttgtgggtACTCTACTCGGTATCAGAGgaatttaaaacaacatatgAAAACTCACAGCTAG
- Protein Sequence
- MGENTTNSCRICLQEVVETEQYYFLNDNQLKLQFKLLDILPQIDLNMTSNPISCSQCMMTIAEIYEFKQLCLHTETTIRNLQQTIPSNNLLRYVKEETIKESLLEDIKIEPLDMQLIHDDYKETNTDGLLCIKEPSESKSGYCPLHSSTHTNNNLYLCHNCDYKTNEKDKLVYHVMIHRNVKQFKCDLCNYLTHTRRSLHSHMLLHKDLKVNNCNQSVHRASLNKHLVELRLCDACGYSTRCKDSLEKHIRTHSSIKPFVCEICGFSSQHKNNFKRHMNSHSLVKPFVCKTCGFSFRSGWELKRHIKTHSSIKPFVCETCEASFRSSGELKNHMITHSSNKPFICETCGFSSRYKNNLKKHMITHSSVKPFACEICGFSSGYKNVLKNHMITHSSVKPFVCETCGLSFRSERELVRHLITHSLVKPFVCETCGISLQSSGELKNHMITHSSIKPFICETCGFSSRYKHNLKKHMITHTSVKPFVCETCGFSCQYKSNLKKHMITHSLVKPFVCETCGFSFRSRRELKHHLITHSLVKPFVCETCGICLRRSGDLQNHKMTHSSIKPFICETCGFSSRYKHNLKKHMITHTSGKPFVCEICGFSSQYKSNLKKHVITQSSVKPFVCEICGFSFRSRRELKYHLITHSLVKPFVCETCGISFCRSADLKNHMITHSSNKPFICETCGFSSRYKHNLKTHMITHTSVKPFICETCGYSTRYQRNLKQHMKIHTLVKPFVCGTCGFSSQHKNNLKKHLTTHSAVKPFVCETCGYSTRYQRNLKQHMKTHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00153708;
- 90% Identity
- iTF_00153708;
- 80% Identity
- iTF_00153708;