Atur007850.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990282.1:6693843-6695641[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.38 4.4e+03 -0.5 0.3 27 44 82 99 61 104 0.77 2 12 0.052 6.1e+02 2.3 0.0 27 47 109 129 100 136 0.85 3 12 0.34 4e+03 -0.3 0.1 22 43 132 153 129 159 0.81 4 12 0.0035 42 6.0 0.2 14 46 151 184 145 192 0.82 5 12 0.011 1.3e+02 4.4 0.1 23 47 217 241 204 248 0.81 6 12 0.018 2.1e+02 3.8 0.0 21 48 271 298 264 303 0.84 7 12 0.0027 31 6.4 0.1 23 48 301 326 298 332 0.88 8 12 0.31 3.7e+03 -0.2 0.0 23 52 330 359 326 360 0.86 9 12 0.0041 48 5.8 0.1 23 48 358 383 354 389 0.85 10 12 0.5 5.8e+03 -0.8 0.0 22 43 385 406 379 411 0.84 11 12 0.00057 6.6 8.6 0.1 21 44 412 435 405 439 0.90 12 12 1.7e-05 0.2 13.4 0.5 20 45 439 464 435 468 0.90
Sequence Information
- Coding Sequence
- ATGTGGGACTGCTCGGTGAAACTTGAACGCATCGAATATGATGAAGAGGATAGTGAGGCGCTCGATGAAGAGGAGGGAATTGAGGACCAGGAAACTGCCAACGATGTTGACTGGAAAATGGACTATGACTCATCCACTCCTACTCGTGtCACATTGAAAAAAAGCGGCTCATCCACCGGGCAGCCAACCCCCACAACGTCAGCGCGCGCGCTCGCACAAAAGGGCACACACGGAGCCTACGAATGCGACGTATGCCGGAAGCGATTTCCGGGGCCTATCAACCTACGGAGGCACAAACGAATACACGCTGGAATCACCTACCCTTGTGATATCTGCAATAAGACGTTCACGCAATCGAGCAGTTTGAAATCCCATAAACGAATACACACGGGCGAAAAACCTTATTCATGTGAAGTGTGCAAGAAGGAGTTCACAGAATTAGGACATTTGAAGCGACACTCGCGAATCCACTCTGGAGATACCCCGTATTCTTGTGATGTCTGCGATAAACGTTTCAAGCAAACCGCTCATTTGAATAGACACAAACAAATCCACACTGGAGTACGGCCTTTCTCTTGTGAATTGTGTCATAAGAGTTTTTCAAGATTATGCCATTTGAAGAAGCATATGCGAACTCATACGGATGTAAAACCTTTCACCTGTGATATTTGCGACAGGAGTTTCGCGGAAACAAGTGATTTGAACAGACATAAACGAATCCACTTGGGAATCAAACCATACTCCTGTGATATATGTGAAAAGAAATTCGCTGAACTGAGCTATTTGAAAACGCACAAGCAAATACATACAAGTGAGAATATATACTCATGCGATTTGTGTGAAAAGAAGTTCACGCAATCAACTCTTTTAAAGCGGCATAAAAGAATTCACACCGGAATTAAACCGTACGCCTGTGATGTGTGCCCGATGAAGTTCACTCAACTTGGTAATTTGAAGAGGCATATAAATAGGGCTCATACGGGAGTCAAGCCTTATTCGTGCGATGTGTGTGAAAAGACTTTTACGGAGCTGAGTAATTTACAAGCACATAAGCGAATACATACTGTTATAAAGCCTTATGCTTGTGATATATGTGAAAAGGAGTTTGCTCAATCGAACGCTTTGAACAGACATAGAAGAATACACACTGGAGACAAGCCATACAGTTGTGACATGTGCGAAAAGAACTTCACGGACTCAACTCTTTTAATGCgacacaaattaatccacactGGTGAAAAGCCACATACTTGTGAAATTTGCGATAAGAAATTCACGGAAATAAGCAATTTGAAACGGCACCGACGGATTCACATGTCAGAAAAACCATACTCTTGTGATATTTGCGAGAAGAAGTTCACACAGTCGAGTCATTTGCGGAGGCACCAGCGAATCCACCAGCCTACAGAGTGGAGCGAGGAATGTGAAGAAATAAAAGAATTACATCAGTCGGTGGAGTGGCAAGAGGAACAGGAGGATAACAAGGATCTTTGCATCATTGAGGTACCTGTGGAAAACACATGA
- Protein Sequence
- MWDCSVKLERIEYDEEDSEALDEEEGIEDQETANDVDWKMDYDSSTPTRVTLKKSGSSTGQPTPTTSARALAQKGTHGAYECDVCRKRFPGPINLRRHKRIHAGITYPCDICNKTFTQSSSLKSHKRIHTGEKPYSCEVCKKEFTELGHLKRHSRIHSGDTPYSCDVCDKRFKQTAHLNRHKQIHTGVRPFSCELCHKSFSRLCHLKKHMRTHTDVKPFTCDICDRSFAETSDLNRHKRIHLGIKPYSCDICEKKFAELSYLKTHKQIHTSENIYSCDLCEKKFTQSTLLKRHKRIHTGIKPYACDVCPMKFTQLGNLKRHINRAHTGVKPYSCDVCEKTFTELSNLQAHKRIHTVIKPYACDICEKEFAQSNALNRHRRIHTGDKPYSCDMCEKNFTDSTLLMRHKLIHTGEKPHTCEICDKKFTEISNLKRHRRIHMSEKPYSCDICEKKFTQSSHLRRHQRIHQPTEWSEECEEIKELHQSVEWQEEQEDNKDLCIIEVPVENT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00149652;
- 90% Identity
- iTF_00149652;
- 80% Identity
- iTF_00149652;