Basic Information

Insect: Apotomis turbidana
Gene Symbol: -
Assembly: GCA_905147355.1
Location: LR990282.1:6693843-6695641[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 8e-06 0.00091 21.2 0.3 1 23 80 102 80 102 0.98

2 14 7.1e-08 8e-06 27.6 1.4 1 23 107 129 107 129 0.98

3 14 2.2e-05 0.0025 19.8 2.1 1 23 135 157 135 157 0.98

4 14 3.8e-06 0.00043 22.2 3.1 1 23 163 185 163 185 0.98

5 14 7.3e-06 0.00083 21.3 10.1 1 23 191 213 191 213 0.98

6 14 1.2e-06 0.00014 23.8 0.6 1 23 219 241 219 241 0.98

7 14 4.3e-05 0.0049 18.9 0.8 1 23 247 269 247 269 0.98

8 14 3.4e-06 0.00039 22.4 2.5 1 23 275 297 275 297 0.98

9 14 2e-06 0.00022 23.1 0.2 1 23 303 326 303 326 0.97

10 14 7.8e-07 8.8e-05 24.4 0.5 1 23 332 354 332 354 0.98

11 14 2.2e-06 0.00025 22.9 0.2 1 23 360 382 360 382 0.98

12 14 1.5e-05 0.0017 20.3 0.8 1 23 388 410 388 410 0.98

13 14 1e-06 0.00011 24.0 2.8 1 23 416 438 416 438 0.98

14 14 5.4e-08 6.1e-06 28.0 3.8 1 23 444 466 444 466 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	8e-06	0.00091	21.2	0.3	1	23	80	102	80	102	0.98
2	14	7.1e-08	8e-06	27.6	1.4	1	23	107	129	107	129	0.98
3	14	2.2e-05	0.0025	19.8	2.1	1	23	135	157	135	157	0.98
4	14	3.8e-06	0.00043	22.2	3.1	1	23	163	185	163	185	0.98
5	14	7.3e-06	0.00083	21.3	10.1	1	23	191	213	191	213	0.98
6	14	1.2e-06	0.00014	23.8	0.6	1	23	219	241	219	241	0.98
7	14	4.3e-05	0.0049	18.9	0.8	1	23	247	269	247	269	0.98
8	14	3.4e-06	0.00039	22.4	2.5	1	23	275	297	275	297	0.98
9	14	2e-06	0.00022	23.1	0.2	1	23	303	326	303	326	0.97
10	14	7.8e-07	8.8e-05	24.4	0.5	1	23	332	354	332	354	0.98
11	14	2.2e-06	0.00025	22.9	0.2	1	23	360	382	360	382	0.98
12	14	1.5e-05	0.0017	20.3	0.8	1	23	388	410	388	410	0.98
13	14	1e-06	0.00011	24.0	2.8	1	23	416	438	416	438	0.98
14	14	5.4e-08	6.1e-06	28.0	3.8	1	23	444	466	444	466	0.98

Sequence Information

Coding Sequence: ATGTGGGACTGCTCGGTGAAACTTGAACGCATCGAATATGATGAAGAGGATAGTGAGGCGCTCGATGAAGAGGAGGGAATTGAGGACCAGGAAACTGCCAACGATGTTGACTGGAAAATGGACTATGACTCATCCACTCCTACTCGTGtCACATTGAAAAAAAGCGGCTCATCCACCGGGCAGCCAACCCCCACAACGTCAGCGCGCGCGCTCGCACAAAAGGGCACACACGGAGCCTACGAATGCGACGTATGCCGGAAGCGATTTCCGGGGCCTATCAACCTACGGAGGCACAAACGAATACACGCTGGAATCACCTACCCTTGTGATATCTGCAATAAGACGTTCACGCAATCGAGCAGTTTGAAATCCCATAAACGAATACACACGGGCGAAAAACCTTATTCATGTGAAGTGTGCAAGAAGGAGTTCACAGAATTAGGACATTTGAAGCGACACTCGCGAATCCACTCTGGAGATACCCCGTATTCTTGTGATGTCTGCGATAAACGTTTCAAGCAAACCGCTCATTTGAATAGACACAAACAAATCCACACTGGAGTACGGCCTTTCTCTTGTGAATTGTGTCATAAGAGTTTTTCAAGATTATGCCATTTGAAGAAGCATATGCGAACTCATACGGATGTAAAACCTTTCACCTGTGATATTTGCGACAGGAGTTTCGCGGAAACAAGTGATTTGAACAGACATAAACGAATCCACTTGGGAATCAAACCATACTCCTGTGATATATGTGAAAAGAAATTCGCTGAACTGAGCTATTTGAAAACGCACAAGCAAATACATACAAGTGAGAATATATACTCATGCGATTTGTGTGAAAAGAAGTTCACGCAATCAACTCTTTTAAAGCGGCATAAAAGAATTCACACCGGAATTAAACCGTACGCCTGTGATGTGTGCCCGATGAAGTTCACTCAACTTGGTAATTTGAAGAGGCATATAAATAGGGCTCATACGGGAGTCAAGCCTTATTCGTGCGATGTGTGTGAAAAGACTTTTACGGAGCTGAGTAATTTACAAGCACATAAGCGAATACATACTGTTATAAAGCCTTATGCTTGTGATATATGTGAAAAGGAGTTTGCTCAATCGAACGCTTTGAACAGACATAGAAGAATACACACTGGAGACAAGCCATACAGTTGTGACATGTGCGAAAAGAACTTCACGGACTCAACTCTTTTAATGCgacacaaattaatccacactGGTGAAAAGCCACATACTTGTGAAATTTGCGATAAGAAATTCACGGAAATAAGCAATTTGAAACGGCACCGACGGATTCACATGTCAGAAAAACCATACTCTTGTGATATTTGCGAGAAGAAGTTCACACAGTCGAGTCATTTGCGGAGGCACCAGCGAATCCACCAGCCTACAGAGTGGAGCGAGGAATGTGAAGAAATAAAAGAATTACATCAGTCGGTGGAGTGGCAAGAGGAACAGGAGGATAACAAGGATCTTTGCATCATTGAGGTACCTGTGGAAAACACATGA
Protein Sequence: MWDCSVKLERIEYDEEDSEALDEEEGIEDQETANDVDWKMDYDSSTPTRVTLKKSGSSTGQPTPTTSARALAQKGTHGAYECDVCRKRFPGPINLRRHKRIHAGITYPCDICNKTFTQSSSLKSHKRIHTGEKPYSCEVCKKEFTELGHLKRHSRIHSGDTPYSCDVCDKRFKQTAHLNRHKQIHTGVRPFSCELCHKSFSRLCHLKKHMRTHTDVKPFTCDICDRSFAETSDLNRHKRIHLGIKPYSCDICEKKFAELSYLKTHKQIHTSENIYSCDLCEKKFTQSTLLKRHKRIHTGIKPYACDVCPMKFTQLGNLKRHINRAHTGVKPYSCDVCEKTFTELSNLQAHKRIHTVIKPYACDICEKEFAQSNALNRHRRIHTGDKPYSCDMCEKNFTDSTLLMRHKLIHTGEKPHTCEICDKKFTEISNLKRHRRIHMSEKPYSCDICEKKFTQSSHLRRHQRIHQPTEWSEECEEIKELHQSVEWQEEQEDNKDLCIIEVPVENT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00150142;
90% Identity: iTF_00150142;
80% Identity: iTF_00150142;