Atur049811.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Apotomis turbidana
Gene Symbol
-
Assembly
GCA_905147355.1
Location
LR990305.1:930741-931976[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00011 0.013 17.6 2.5 1 23 49 72 49 72 0.95
2 10 5.2e-05 0.0058 18.6 3.0 2 23 80 102 79 102 0.95
3 10 4.2 4.7e+02 3.2 6.5 2 23 110 132 109 132 0.95
4 10 0.00036 0.04 16.0 3.4 2 23 140 162 139 162 0.96
5 10 2.7e-05 0.003 19.5 3.7 1 23 169 192 169 192 0.98
6 10 0.0015 0.17 14.1 5.4 1 23 198 221 198 221 0.94
7 10 1e-05 0.0011 20.9 0.7 2 23 229 250 229 250 0.98
8 10 0.0051 0.57 12.4 1.9 2 23 258 280 257 280 0.96
9 10 0.00013 0.015 17.4 3.2 2 23 288 310 287 310 0.94
10 10 0.00014 0.016 17.3 3.5 1 23 320 342 320 342 0.97

Sequence Information

Coding Sequence
ATGGAGGCGAAGCCGGAGGTGGCCCCGACGGACATGAAGTTCATCAGCGTGACCAGCTCCATCCTCACCGACGAACAGCGGGAGATGTACGAGTCCGTACTCACCACCTGGAAGCCCATGATGTTCAAACAACCCGCCAAGAGATTCATTTGCCCCGAATGCCACAAAGAATTCAAGAACTATCAAAATCTCTACTTGCATACTACTAGAGTGCATTCAACTAGGGACTCCGCTGTTGTCTGCAATGTGTGCGACAAAACATTCAAGAATAAACACTACTTGTACATGCACAGGATGAATAAGCACTACTCGGAGGATGAGAAGTGCTATTGCCAGTTTTGCATGCAGGAGTTTCGAACTCGCCGCGCGTTGCATATGCATGTGAAAAGGTTTCATCCGTCGGCGCTGCCAGAGATTAAGTGCGAAGTATGCGGCAAACAATTCTCTGTTCCATGCAAACTTAAATACCATATGGAGTCTTGCCATAGAGAGGATAAGGAGAAGTATAAATGTCATATTTGCCAgaaattgtataaaaataatttaaacctGAATAGACATTTGCTAACGCAGCATGCCGAAGTCGAGCGGCACCCCTGTGTGTTTTGTCCAATGACTTTCAAATCGAAACATCACATGAAACGGCACATACTGAATATACACCCGCCATTGGAGTCCAAAGCGACGTGCCCGGAGTGTTCGAGGGAGTTTAAAAACGAGAAGTATTTAAAGGATCACATGCAGATTCACTCGTCACAGGAAACGAAAGTGAAATGCGATGTCTGTGAGAAATTCTTCCATTCCGCCATTCGTTTGAAGAAGCACAAGAAGATAGTGCATCCGGAGCCTAAACCTATGATACGGTGTGATAAATGTGACAAGGAATTCGTCCACGCTCATTATTTGAGAAGACATAACAACTCTGTCCATGTAGAGGTGGATGAGACGGAATATCAGCACGAATGCGACCAATGCGGTAAAAAATTCAAGATCCGGAAGTATTTGCTAAACCATCTGCAAAGACACGAGCAGCAACATCTAAAACGAATCTCAATGATGGTAAAAACAGTTATGGGGGAGGATGGGAAGGAAATAGAAGTGCCAGTTTCGGCGCAGCCGAAACGGGGACGAGGACGACCGCGGAAAGAACCTCCTAAAGCAATAGAATTCATTAAGTGCGAACCTGAGACCAGCTCTGAGTCAGGGTCGGATGAAACTGATACTGATTCAGAATAA
Protein Sequence
MEAKPEVAPTDMKFISVTSSILTDEQREMYESVLTTWKPMMFKQPAKRFICPECHKEFKNYQNLYLHTTRVHSTRDSAVVCNVCDKTFKNKHYLYMHRMNKHYSEDEKCYCQFCMQEFRTRRALHMHVKRFHPSALPEIKCEVCGKQFSVPCKLKYHMESCHREDKEKYKCHICQKLYKNNLNLNRHLLTQHAEVERHPCVFCPMTFKSKHHMKRHILNIHPPLESKATCPECSREFKNEKYLKDHMQIHSSQETKVKCDVCEKFFHSAIRLKKHKKIVHPEPKPMIRCDKCDKEFVHAHYLRRHNNSVHVEVDETEYQHECDQCGKKFKIRKYLLNHLQRHEQQHLKRISMMVKTVMGEDGKEIEVPVSAQPKRGRGRPRKEPPKAIEFIKCEPETSSESGSDETDTDSE*