Paur030106.1
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- -
- Assembly
- GCA_947086415.1
- Location
- OX352311.1:4220942-4222162[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.8e-05 0.0032 19.3 0.9 1 23 49 72 49 72 0.95 2 10 6e-05 0.0067 18.2 2.9 3 23 81 102 79 102 0.94 3 10 2.6 2.9e+02 3.6 6.2 2 23 110 132 109 132 0.95 4 10 8.3e-06 0.00093 20.9 1.0 2 23 140 161 139 162 0.95 5 10 0.00026 0.029 16.2 2.7 1 23 168 191 168 191 0.98 6 10 0.0022 0.25 13.3 6.4 1 23 197 220 197 220 0.95 7 10 8.3e-06 0.00092 20.9 0.7 2 23 228 249 228 249 0.98 8 10 0.00068 0.076 14.9 1.9 2 23 257 279 256 279 0.96 9 10 8.4e-05 0.0093 17.8 4.7 2 23 287 309 286 309 0.95 10 10 0.00037 0.041 15.8 2.6 1 23 319 341 319 341 0.96
Sequence Information
- Coding Sequence
- ATGGCGGAACAGCCGGAGGCAGCACCGAGTGACATGAAATTCATCAGCGTGACCAGCTCGCTGCTGACCGATGAGCAACGGGAGATGTATGAGTCCGTACTGTCCACATGGAAGCCCGTAGAGTTCGAGCAGCCTGCCAAGAGATACATCTGCCCTGAATGCAACAAGGAATTCAAGAACTACCAGAATCTATACTTGCATACTACCAGAGTGCATTCTAAGAGGGATTCAGCTGTCATCTGCAATGTATGCGACAAAACTTTTAAAAACAAACATTATCTGTACATGCACAGAATGAACAAACACTATTCTGAAGACGAGAAGTGCTACTGTCAGTTTTGCATGCAAGAGTTCCGGACGAGTCGGGCGCTACACATGCATGTCAAAAAGTTCCATCCGGCTGCTCTACCAGAGATCAAATGCGAGGAGTGCGGCAAACAGTTCTCTGTCCCTTACAAGCTGAAGTACCATATTGAATCTCACCACAAGGATAAGAAGCAATACACGTGCCATCTATGCCAGAAGTTGTATGCAAGCATGATGAATTTAAACAGACATTTACAGACGCAGCATACTCAGGTGCAACGCCATTCGTGCGTGTTCTGCCCTATGACTTTCAAATCGAAACATCACATGAAACGCCATATTCTAAACATACATCCTCCATTAGAATCTAAAGCGACCTGCCCGGAATGTTCCAGAGAATTTAAAAACGAGAAATATTTAAAAGAGCATATGCAAATACATTCTGCGCCTGATACTAAAGTGAAATGCGATATTTGCGATAAGTTTTTCCATTCCGCTATTCGCTTGAAGAAACATAAGAAGATCGTGCATCCGGAGCCTAGACCGATGGTCCAATGTAGCAAATGTGACAAGAAATTCGTTCACGCACATTATTTAAAAAGACACTTCAACTCGGTCCATGTGGAAGTTGACGAGACACAATACGAGCATGAATGTGACCAGTGCGGTAAAAAATTCAAGATTAGAAAGTATCTCCTTAACCATTTGGGGAGACATGAGCAGCAGCATTTGAAGAGTTTGTCCATGATGGTGAAGACGGTTATGAACGAGGACGGGAAGGAGGTAGAGGTTCCTGTGCCGAGGAGACGGGGGAGGTCGAAGAAACAGCCACCGAAGGATATAGAGTTTATTAAGTGCGAGCCTCAGACTAGTTCCGAGTCGGGGTCTGATGAAACTGATTCAGAGTCAGAGTGA
- Protein Sequence
- MAEQPEAAPSDMKFISVTSSLLTDEQREMYESVLSTWKPVEFEQPAKRYICPECNKEFKNYQNLYLHTTRVHSKRDSAVICNVCDKTFKNKHYLYMHRMNKHYSEDEKCYCQFCMQEFRTSRALHMHVKKFHPAALPEIKCEECGKQFSVPYKLKYHIESHHKDKKQYTCHLCQKLYASMMNLNRHLQTQHTQVQRHSCVFCPMTFKSKHHMKRHILNIHPPLESKATCPECSREFKNEKYLKEHMQIHSAPDTKVKCDICDKFFHSAIRLKKHKKIVHPEPRPMVQCSKCDKKFVHAHYLKRHFNSVHVEVDETQYEHECDQCGKKFKIRKYLLNHLGRHEQQHLKSLSMMVKTVMNEDGKEVEVPVPRRRGRSKKQPPKDIEFIKCEPQTSSESGSDETDSESE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00149766;
- 90% Identity
- -
- 80% Identity
- -